Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26675

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26670 and BPHYT_RS26675 are separated by 46 nucleotidesBPHYT_RS26675 and BPHYT_RS26680 are separated by 428 nucleotides BPHYT_RS26670: BPHYT_RS26670 - Cobalt-precorrin-5B C(1)-methyltransferase, at 1,551,648 to 1,552,745 _RS26670 BPHYT_RS26675: BPHYT_RS26675 - precorrin-6Y C5,15-methyltransferase, at 1,552,792 to 1,554,015 _RS26675 BPHYT_RS26680: BPHYT_RS26680 - oxidoreductase, at 1,554,444 to 1,555,886 _RS26680 Position (kb) 1552 1553 1554 1555Strain fitness (log2 ratio) -1 0 1at 1551.908 kb on + strand, within BPHYT_RS26670at 1551.995 kb on + strand, within BPHYT_RS26670at 1551.995 kb on + strand, within BPHYT_RS26670at 1551.996 kb on - strand, within BPHYT_RS26670at 1552.057 kb on + strand, within BPHYT_RS26670at 1552.440 kb on + strand, within BPHYT_RS26670at 1553.585 kb on - strand, within BPHYT_RS26675at 1553.987 kb on - strandat 1554.105 kb on + strandat 1554.109 kb on - strandat 1554.176 kb on - strandat 1554.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,551,908 + BPHYT_RS26670 0.24 -0.1
1,551,995 + BPHYT_RS26670 0.32 +0.3
1,551,995 + BPHYT_RS26670 0.32 -0.5
1,551,996 - BPHYT_RS26670 0.32 +1.5
1,552,057 + BPHYT_RS26670 0.37 -0.6
1,552,440 + BPHYT_RS26670 0.72 -0.6
1,553,585 - BPHYT_RS26675 0.65 -0.9
1,553,987 - -0.7
1,554,105 + -0.2
1,554,109 - -0.3
1,554,176 - -0.4
1,554,401 - -1.0

Or see this region's nucleotide sequence