Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26660

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26655 and BPHYT_RS26660 are separated by 105 nucleotidesBPHYT_RS26660 and BPHYT_RS26665 are separated by 62 nucleotidesBPHYT_RS26665 and BPHYT_RS26670 are separated by 2 nucleotides BPHYT_RS26655: BPHYT_RS26655 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 1,547,735 to 1,550,029 _RS26655 BPHYT_RS26660: BPHYT_RS26660 - precorrin-4 C11-methyltransferase, at 1,550,135 to 1,550,860 _RS26660 BPHYT_RS26665: BPHYT_RS26665 - cobalt-precorrin-6X reductase, at 1,550,923 to 1,551,645 _RS26665 BPHYT_RS26670: BPHYT_RS26670 - Cobalt-precorrin-5B C(1)-methyltransferase, at 1,551,648 to 1,552,745 _RS26670 Position (kb) 1550 1551Strain fitness (log2 ratio) -1 0 1at 1549.170 kb on + strand, within BPHYT_RS26655at 1549.651 kb on + strand, within BPHYT_RS26655at 1549.657 kb on + strand, within BPHYT_RS26655at 1549.788 kb on - strand, within BPHYT_RS26655at 1550.325 kb on + strand, within BPHYT_RS26660at 1550.336 kb on + strand, within BPHYT_RS26660at 1550.480 kb on - strand, within BPHYT_RS26660at 1550.846 kb on - strandat 1551.085 kb on + strand, within BPHYT_RS26665at 1551.200 kb on - strand, within BPHYT_RS26665at 1551.230 kb on + strand, within BPHYT_RS26665at 1551.257 kb on - strand, within BPHYT_RS26665at 1551.479 kb on + strand, within BPHYT_RS26665at 1551.489 kb on + strand, within BPHYT_RS26665at 1551.567 kb on + strand, within BPHYT_RS26665at 1551.568 kb on - strand, within BPHYT_RS26665at 1551.569 kb on + strand, within BPHYT_RS26665at 1551.570 kb on - strand, within BPHYT_RS26665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,549,170 + BPHYT_RS26655 0.63 +0.3
1,549,651 + BPHYT_RS26655 0.83 -0.1
1,549,657 + BPHYT_RS26655 0.84 -0.2
1,549,788 - BPHYT_RS26655 0.89 +1.1
1,550,325 + BPHYT_RS26660 0.26 -1.3
1,550,336 + BPHYT_RS26660 0.28 -0.7
1,550,480 - BPHYT_RS26660 0.48 -1.3
1,550,846 - -0.4
1,551,085 + BPHYT_RS26665 0.22 -0.8
1,551,200 - BPHYT_RS26665 0.38 -0.4
1,551,230 + BPHYT_RS26665 0.42 +0.1
1,551,257 - BPHYT_RS26665 0.46 +0.5
1,551,479 + BPHYT_RS26665 0.77 -0.4
1,551,489 + BPHYT_RS26665 0.78 -0.3
1,551,567 + BPHYT_RS26665 0.89 -1.1
1,551,568 - BPHYT_RS26665 0.89 -0.2
1,551,569 + BPHYT_RS26665 0.89 -0.8
1,551,570 - BPHYT_RS26665 0.89 +0.8

Or see this region's nucleotide sequence