Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25405

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25400 and BPHYT_RS25405 are separated by 77 nucleotidesBPHYT_RS25405 and BPHYT_RS25410 are separated by 358 nucleotides BPHYT_RS25400: BPHYT_RS25400 - butyryl-CoA dehydrogenase, at 1,275,903 to 1,277,048 _RS25400 BPHYT_RS25405: BPHYT_RS25405 - CoA-transferase, at 1,277,126 to 1,278,196 _RS25405 BPHYT_RS25410: BPHYT_RS25410 - porin, at 1,278,555 to 1,279,670 _RS25410 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -1 0 1at 1276.597 kb on + strand, within BPHYT_RS25400at 1277.218 kb on - strandat 1277.686 kb on - strand, within BPHYT_RS25405at 1277.785 kb on - strand, within BPHYT_RS25405at 1277.850 kb on + strand, within BPHYT_RS25405at 1278.292 kb on - strandat 1278.560 kb on + strandat 1278.639 kb on + strandat 1278.843 kb on + strand, within BPHYT_RS25410at 1278.906 kb on + strand, within BPHYT_RS25410at 1279.037 kb on + strand, within BPHYT_RS25410at 1279.087 kb on - strand, within BPHYT_RS25410

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,276,597 + BPHYT_RS25400 0.61 -0.3
1,277,218 - -0.3
1,277,686 - BPHYT_RS25405 0.52 -0.3
1,277,785 - BPHYT_RS25405 0.62 +0.1
1,277,850 + BPHYT_RS25405 0.68 +0.1
1,278,292 - -0.0
1,278,560 + +0.7
1,278,639 + -0.2
1,278,843 + BPHYT_RS25410 0.26 -0.8
1,278,906 + BPHYT_RS25410 0.31 +0.0
1,279,037 + BPHYT_RS25410 0.43 -0.3
1,279,087 - BPHYT_RS25410 0.48 -0.1

Or see this region's nucleotide sequence