Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20040 and BPHYT_RS20045 are separated by 146 nucleotides BPHYT_RS20045 and BPHYT_RS20050 are separated by 117 nucleotides BPHYT_RS20050 and BPHYT_RS20055 are separated by 342 nucleotides
BPHYT_RS20040: BPHYT_RS20040 - amidohydrolase, at 41,099 to 41,983
_RS20040
BPHYT_RS20045: BPHYT_RS20045 - farnesyl-diphosphate farnesyltransferase, at 42,130 to 43,176
_RS20045
BPHYT_RS20050: BPHYT_RS20050 - hypothetical protein, at 43,294 to 43,542
_RS20050
BPHYT_RS20055: BPHYT_RS20055 - hypothetical protein, at 43,885 to 44,202
_RS20055
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.268 kb on - strand, within BPHYT_RS20040 at 41.460 kb on - strand, within BPHYT_RS20040 at 41.747 kb on - strand, within BPHYT_RS20040 at 41.790 kb on - strand, within BPHYT_RS20040 at 43.219 kb on + strand at 43.242 kb on - strand at 43.312 kb on - strand at 43.776 kb on + strand at 43.843 kb on - strand at 43.886 kb on + strand at 44.069 kb on + strand, within BPHYT_RS20055 at 44.069 kb on + strand, within BPHYT_RS20055
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 41,268 - BPHYT_RS20040 0.19 +0.1 41,460 - BPHYT_RS20040 0.41 +0.0 41,747 - BPHYT_RS20040 0.73 -2.1 41,790 - BPHYT_RS20040 0.78 -0.1 43,219 + +0.0 43,242 - +1.4 43,312 - -0.1 43,776 + +2.4 43,843 - -0.8 43,886 + +0.7 44,069 + BPHYT_RS20055 0.58 +0.2 44,069 + BPHYT_RS20055 0.58 +0.5
Or see this region's nucleotide sequence