Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20025

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20015 and BPHYT_RS20020 are separated by 331 nucleotidesBPHYT_RS20020 and BPHYT_RS20025 are separated by 137 nucleotidesBPHYT_RS20025 and BPHYT_RS20030 are separated by 81 nucleotides BPHYT_RS20015: BPHYT_RS20015 - MFS transporter, at 34,544 to 35,791 _RS20015 BPHYT_RS20020: BPHYT_RS20020 - MarR family transcriptional regulator, at 36,123 to 36,623 _RS20020 BPHYT_RS20025: BPHYT_RS20025 - crotonase, at 36,761 to 37,588 _RS20025 BPHYT_RS20030: BPHYT_RS20030 - salicylaldehyde dehydrogenase, at 37,670 to 39,121 _RS20030 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1at 36.093 kb on + strandat 37.466 kb on + strand, within BPHYT_RS20025at 37.473 kb on - strand, within BPHYT_RS20025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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36,093 + -0.8
37,466 + BPHYT_RS20025 0.85 -2.4
37,473 - BPHYT_RS20025 0.86 +0.9

Or see this region's nucleotide sequence