Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14745 and BPHYT_RS14750 are separated by 93 nucleotides BPHYT_RS14750 and BPHYT_RS14755 are separated by 145 nucleotides BPHYT_RS14755 and BPHYT_RS14760 are separated by 25 nucleotides BPHYT_RS14760 and BPHYT_RS14765 are separated by 132 nucleotides
BPHYT_RS14745: BPHYT_RS14745 - DNA mismatch repair protein MutT, at 3,357,507 to 3,358,235
_RS14745
BPHYT_RS14750: BPHYT_RS14750 - 50S ribosomal protein L19, at 3,358,329 to 3,358,718
_RS14750
BPHYT_RS14755: BPHYT_RS14755 - tRNA (guanine-N(1)-)-methyltransferase, at 3,358,864 to 3,359,631
_RS14755
BPHYT_RS14760: BPHYT_RS14760 - ribosome maturation factor RimM, at 3,359,657 to 3,360,403
_RS14760
BPHYT_RS14765: BPHYT_RS14765 - 30S ribosomal protein S16, at 3,360,536 to 3,360,790
_RS14765
Position (kb)
3358
3359
3360 Strain fitness (log2 ratio)
-2
-1
0
1 at 3358.321 kb on + strand at 3359.061 kb on - strand, within BPHYT_RS14755 at 3359.079 kb on - strand, within BPHYT_RS14755 at 3359.496 kb on - strand, within BPHYT_RS14755 at 3359.530 kb on - strand, within BPHYT_RS14755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 3,358,321 + -0.0 3,359,061 - BPHYT_RS14755 0.26 -2.0 3,359,079 - BPHYT_RS14755 0.28 -2.2 3,359,496 - BPHYT_RS14755 0.82 -1.0 3,359,530 - BPHYT_RS14755 0.87 -0.6
Or see this region's nucleotide sequence