Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14755

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS14745 and BPHYT_RS14750 are separated by 93 nucleotidesBPHYT_RS14750 and BPHYT_RS14755 are separated by 145 nucleotidesBPHYT_RS14755 and BPHYT_RS14760 are separated by 25 nucleotidesBPHYT_RS14760 and BPHYT_RS14765 are separated by 132 nucleotides BPHYT_RS14745: BPHYT_RS14745 - DNA mismatch repair protein MutT, at 3,357,507 to 3,358,235 _RS14745 BPHYT_RS14750: BPHYT_RS14750 - 50S ribosomal protein L19, at 3,358,329 to 3,358,718 _RS14750 BPHYT_RS14755: BPHYT_RS14755 - tRNA (guanine-N(1)-)-methyltransferase, at 3,358,864 to 3,359,631 _RS14755 BPHYT_RS14760: BPHYT_RS14760 - ribosome maturation factor RimM, at 3,359,657 to 3,360,403 _RS14760 BPHYT_RS14765: BPHYT_RS14765 - 30S ribosomal protein S16, at 3,360,536 to 3,360,790 _RS14765 Position (kb) 3358 3359 3360Strain fitness (log2 ratio) -2 -1 0 1at 3358.321 kb on + strandat 3359.061 kb on - strand, within BPHYT_RS14755at 3359.079 kb on - strand, within BPHYT_RS14755at 3359.496 kb on - strand, within BPHYT_RS14755at 3359.530 kb on - strand, within BPHYT_RS14755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
3,358,321 + -0.0
3,359,061 - BPHYT_RS14755 0.26 -2.0
3,359,079 - BPHYT_RS14755 0.28 -2.2
3,359,496 - BPHYT_RS14755 0.82 -1.0
3,359,530 - BPHYT_RS14755 0.87 -0.6

Or see this region's nucleotide sequence