Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11780

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11775 and BPHYT_RS11780 are separated by 332 nucleotidesBPHYT_RS11780 and BPHYT_RS11785 overlap by 1 nucleotides BPHYT_RS11775: BPHYT_RS11775 - AraC family transcriptional regulator, at 2,669,957 to 2,671,009 _RS11775 BPHYT_RS11780: BPHYT_RS11780 - enoyl-CoA hydratase, at 2,671,342 to 2,672,112 _RS11780 BPHYT_RS11785: BPHYT_RS11785 - formyl-CoA transferase, at 2,672,112 to 2,673,344 _RS11785 Position (kb) 2671 2672 2673Strain fitness (log2 ratio) -1 0 1at 2670.723 kb on + strand, within BPHYT_RS11775at 2670.723 kb on + strand, within BPHYT_RS11775at 2670.724 kb on - strand, within BPHYT_RS11775at 2670.724 kb on - strand, within BPHYT_RS11775at 2670.725 kb on + strand, within BPHYT_RS11775at 2671.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,670,723 + BPHYT_RS11775 0.73 +0.2
2,670,723 + BPHYT_RS11775 0.73 -0.0
2,670,724 - BPHYT_RS11775 0.73 -0.1
2,670,724 - BPHYT_RS11775 0.73 +0.4
2,670,725 + BPHYT_RS11775 0.73 +0.0
2,671,013 - +1.1

Or see this region's nucleotide sequence