Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08665

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08650 and BPHYT_RS08655 are separated by 48 nucleotidesBPHYT_RS08655 and BPHYT_RS08660 are separated by 8 nucleotidesBPHYT_RS08660 and BPHYT_RS08665 are separated by 149 nucleotidesBPHYT_RS08665 and BPHYT_RS08670 are separated by 125 nucleotidesBPHYT_RS08670 and BPHYT_RS08675 are separated by 57 nucleotidesBPHYT_RS08675 and BPHYT_RS08680 are separated by 148 nucleotides BPHYT_RS08650: BPHYT_RS08650 - sulfonate ABC transporter ATP-binding protein, at 1,971,274 to 1,972,275 _RS08650 BPHYT_RS08655: BPHYT_RS08655 - transporter, at 1,972,324 to 1,972,539 _RS08655 BPHYT_RS08660: BPHYT_RS08660 - hypothetical protein, at 1,972,548 to 1,972,829 _RS08660 BPHYT_RS08665: BPHYT_RS08665 - hypothetical protein, at 1,972,979 to 1,973,176 _RS08665 BPHYT_RS08670: BPHYT_RS08670 - hypothetical protein, at 1,973,302 to 1,973,574 _RS08670 BPHYT_RS08675: BPHYT_RS08675 - bleomycin resistance protein, at 1,973,632 to 1,974,000 _RS08675 BPHYT_RS08680: BPHYT_RS08680 - hypothetical protein, at 1,974,149 to 1,974,415 _RS08680 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -1 0 1at 1972.829 kb on + strandat 1972.947 kb on - strandat 1972.947 kb on - strandat 1973.153 kb on + strand, within BPHYT_RS08665at 1973.353 kb on + strand, within BPHYT_RS08670at 1973.354 kb on - strand, within BPHYT_RS08670at 1973.455 kb on - strand, within BPHYT_RS08670at 1973.465 kb on + strand, within BPHYT_RS08670at 1973.465 kb on + strand, within BPHYT_RS08670at 1973.466 kb on - strand, within BPHYT_RS08670at 1973.715 kb on + strand, within BPHYT_RS08675at 1973.716 kb on - strand, within BPHYT_RS08675at 1973.864 kb on + strand, within BPHYT_RS08675at 1973.865 kb on - strand, within BPHYT_RS08675at 1973.865 kb on - strand, within BPHYT_RS08675at 1973.890 kb on + strand, within BPHYT_RS08675at 1973.896 kb on + strand, within BPHYT_RS08675at 1973.897 kb on - strand, within BPHYT_RS08675at 1974.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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1,972,829 + -0.2
1,972,947 - -0.0
1,972,947 - +0.1
1,973,153 + BPHYT_RS08665 0.88 -1.1
1,973,353 + BPHYT_RS08670 0.19 -0.1
1,973,354 - BPHYT_RS08670 0.19 -0.5
1,973,455 - BPHYT_RS08670 0.56 +0.3
1,973,465 + BPHYT_RS08670 0.60 -0.0
1,973,465 + BPHYT_RS08670 0.60 -1.0
1,973,466 - BPHYT_RS08670 0.60 +0.1
1,973,715 + BPHYT_RS08675 0.22 -0.2
1,973,716 - BPHYT_RS08675 0.23 -1.2
1,973,864 + BPHYT_RS08675 0.63 -0.4
1,973,865 - BPHYT_RS08675 0.63 +0.4
1,973,865 - BPHYT_RS08675 0.63 -0.1
1,973,890 + BPHYT_RS08675 0.70 -1.3
1,973,896 + BPHYT_RS08675 0.72 -0.2
1,973,897 - BPHYT_RS08675 0.72 +0.1
1,974,068 + -0.2

Or see this region's nucleotide sequence