Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08630

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS08625 and BPHYT_RS08630 are separated by 46 nucleotidesBPHYT_RS08630 and BPHYT_RS08635 are separated by 93 nucleotides BPHYT_RS08625: BPHYT_RS08625 - TetR family transcriptional regulator, at 1,966,114 to 1,967,028 _RS08625 BPHYT_RS08630: BPHYT_RS08630 - 3-hydroxyisobutyryl-CoA hydrolase, at 1,967,075 to 1,968,199 _RS08630 BPHYT_RS08635: BPHYT_RS08635 - membrane protein, at 1,968,293 to 1,968,718 _RS08635 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -2 -1 0 1at 1966.400 kb on - strand, within BPHYT_RS08625at 1966.956 kb on + strandat 1967.121 kb on - strandat 1967.310 kb on - strand, within BPHYT_RS08630at 1967.405 kb on + strand, within BPHYT_RS08630at 1967.406 kb on - strand, within BPHYT_RS08630at 1967.595 kb on - strand, within BPHYT_RS08630at 1967.639 kb on + strand, within BPHYT_RS08630at 1967.640 kb on - strand, within BPHYT_RS08630at 1967.660 kb on + strand, within BPHYT_RS08630at 1967.660 kb on + strand, within BPHYT_RS08630at 1967.661 kb on - strand, within BPHYT_RS08630at 1968.771 kb on + strandat 1968.792 kb on + strandat 1968.793 kb on - strandat 1968.793 kb on - strandat 1968.793 kb on - strandat 1968.793 kb on - strandat 1968.793 kb on - strandat 1968.794 kb on + strandat 1968.794 kb on + strandat 1968.795 kb on - strandat 1968.795 kb on - strandat 1968.795 kb on - strandat 1968.796 kb on + strandat 1968.796 kb on + strandat 1968.796 kb on + strandat 1968.796 kb on + strandat 1968.797 kb on - strandat 1968.797 kb on - strandat 1968.797 kb on - strandat 1968.798 kb on + strandat 1968.799 kb on - strandat 1968.805 kb on - strandat 1968.805 kb on - strandat 1968.847 kb on + strandat 1968.879 kb on + strandat 1969.192 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
1,966,400 - BPHYT_RS08625 0.31 +0.1
1,966,956 + -0.4
1,967,121 - +0.5
1,967,310 - BPHYT_RS08630 0.21 +0.4
1,967,405 + BPHYT_RS08630 0.29 +0.6
1,967,406 - BPHYT_RS08630 0.29 +0.4
1,967,595 - BPHYT_RS08630 0.46 -0.3
1,967,639 + BPHYT_RS08630 0.50 -0.4
1,967,640 - BPHYT_RS08630 0.50 -0.5
1,967,660 + BPHYT_RS08630 0.52 -0.1
1,967,660 + BPHYT_RS08630 0.52 -0.4
1,967,661 - BPHYT_RS08630 0.52 -0.1
1,968,771 + +0.4
1,968,792 + +1.5
1,968,793 - -0.2
1,968,793 - +0.0
1,968,793 - -0.6
1,968,793 - -0.1
1,968,793 - +0.0
1,968,794 + -1.8
1,968,794 + -0.2
1,968,795 - -0.1
1,968,795 - +0.3
1,968,795 - -0.1
1,968,796 + +0.6
1,968,796 + +0.3
1,968,796 + +0.7
1,968,796 + +1.4
1,968,797 - -0.3
1,968,797 - -0.2
1,968,797 - -0.4
1,968,798 + -0.4
1,968,799 - +0.3
1,968,805 - -0.2
1,968,805 - -0.3
1,968,847 + +0.9
1,968,879 + -0.2
1,969,192 + -0.1

Or see this region's nucleotide sequence