Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06760

Experiment: L-Phenylalanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS06750 and BPHYT_RS06755 are separated by 11 nucleotidesBPHYT_RS06755 and BPHYT_RS06760 overlap by 4 nucleotidesBPHYT_RS06760 and BPHYT_RS06765 are separated by 126 nucleotidesBPHYT_RS06765 and BPHYT_RS06770 are separated by 106 nucleotides BPHYT_RS06750: BPHYT_RS06750 - fructose-2,6-bisphosphatase, at 1,527,827 to 1,528,543 _RS06750 BPHYT_RS06755: BPHYT_RS06755 - enoyl-CoA hydratase, at 1,528,555 to 1,529,343 _RS06755 BPHYT_RS06760: BPHYT_RS06760 - 3-hydroxyacyl-CoA dehydrogenase, at 1,529,340 to 1,530,905 _RS06760 BPHYT_RS06765: BPHYT_RS06765 - glutathione S-transferase, at 1,531,032 to 1,531,679 _RS06765 BPHYT_RS06770: BPHYT_RS06770 - aminotransferase, at 1,531,786 to 1,532,958 _RS06770 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1528.479 kb on + strandat 1528.479 kb on + strandat 1528.483 kb on + strandat 1528.483 kb on + strandat 1528.533 kb on + strandat 1528.534 kb on - strandat 1529.240 kb on + strand, within BPHYT_RS06755at 1530.136 kb on + strand, within BPHYT_RS06760at 1530.136 kb on + strand, within BPHYT_RS06760at 1530.149 kb on - strand, within BPHYT_RS06760at 1530.299 kb on + strand, within BPHYT_RS06760at 1530.300 kb on - strand, within BPHYT_RS06760at 1530.300 kb on - strand, within BPHYT_RS06760at 1530.341 kb on + strand, within BPHYT_RS06760at 1530.539 kb on + strand, within BPHYT_RS06760at 1530.539 kb on + strand, within BPHYT_RS06760at 1530.539 kb on + strand, within BPHYT_RS06760at 1530.539 kb on + strand, within BPHYT_RS06760at 1530.679 kb on - strand, within BPHYT_RS06760at 1530.679 kb on - strand, within BPHYT_RS06760at 1530.796 kb on + strandat 1530.928 kb on - strandat 1530.928 kb on - strandat 1531.007 kb on - strandat 1531.007 kb on - strandat 1531.007 kb on - strandat 1531.068 kb on + strandat 1531.068 kb on + strandat 1531.069 kb on - strandat 1531.069 kb on - strandat 1531.233 kb on + strand, within BPHYT_RS06765at 1531.354 kb on - strand, within BPHYT_RS06765at 1531.465 kb on - strand, within BPHYT_RS06765at 1531.506 kb on + strand, within BPHYT_RS06765at 1531.506 kb on + strand, within BPHYT_RS06765at 1531.507 kb on - strand, within BPHYT_RS06765at 1531.507 kb on - strand, within BPHYT_RS06765at 1531.548 kb on + strand, within BPHYT_RS06765at 1531.549 kb on - strand, within BPHYT_RS06765at 1531.549 kb on - strandat 1531.593 kb on + strand, within BPHYT_RS06765at 1531.593 kb on + strand, within BPHYT_RS06765at 1531.594 kb on - strand, within BPHYT_RS06765at 1531.653 kb on + strandat 1531.653 kb on + strandat 1531.653 kb on + strandat 1531.653 kb on + strandat 1531.654 kb on - strandat 1531.654 kb on - strandat 1531.655 kb on + strandat 1531.656 kb on - strandat 1531.787 kb on + strandat 1531.788 kb on - strandat 1531.880 kb on + strandat 1531.881 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
remove
1,528,479 + -0.6
1,528,479 + +0.0
1,528,483 + +0.1
1,528,483 + -0.3
1,528,533 + +0.6
1,528,534 - +1.0
1,529,240 + BPHYT_RS06755 0.87 -3.1
1,530,136 + BPHYT_RS06760 0.51 -1.1
1,530,136 + BPHYT_RS06760 0.51 -4.4
1,530,149 - BPHYT_RS06760 0.52 +0.6
1,530,299 + BPHYT_RS06760 0.61 -3.0
1,530,300 - BPHYT_RS06760 0.61 -1.2
1,530,300 - BPHYT_RS06760 0.61 -0.8
1,530,341 + BPHYT_RS06760 0.64 +1.4
1,530,539 + BPHYT_RS06760 0.77 -0.6
1,530,539 + BPHYT_RS06760 0.77 -2.0
1,530,539 + BPHYT_RS06760 0.77 -4.4
1,530,539 + BPHYT_RS06760 0.77 -3.5
1,530,679 - BPHYT_RS06760 0.86 -0.8
1,530,679 - BPHYT_RS06760 0.86 -0.6
1,530,796 + -5.9
1,530,928 - +0.4
1,530,928 - -0.3
1,531,007 - +0.0
1,531,007 - +0.9
1,531,007 - +1.4
1,531,068 + -1.1
1,531,068 + -0.9
1,531,069 - -0.0
1,531,069 - +0.0
1,531,233 + BPHYT_RS06765 0.31 +0.0
1,531,354 - BPHYT_RS06765 0.50 -0.1
1,531,465 - BPHYT_RS06765 0.67 -0.9
1,531,506 + BPHYT_RS06765 0.73 +0.6
1,531,506 + BPHYT_RS06765 0.73 -1.1
1,531,507 - BPHYT_RS06765 0.73 +0.1
1,531,507 - BPHYT_RS06765 0.73 +1.2
1,531,548 + BPHYT_RS06765 0.80 -0.6
1,531,549 - BPHYT_RS06765 0.80 -0.2
1,531,549 - +0.9
1,531,593 + BPHYT_RS06765 0.87 +0.4
1,531,593 + BPHYT_RS06765 0.87 +1.0
1,531,594 - BPHYT_RS06765 0.87 -0.7
1,531,653 + -1.1
1,531,653 + -0.1
1,531,653 + -0.7
1,531,653 + -0.1
1,531,654 - +0.5
1,531,654 - +2.4
1,531,655 + -0.8
1,531,656 - -0.2
1,531,787 + -0.2
1,531,788 - +0.2
1,531,880 + -0.3
1,531,881 - -0.5

Or see this region's nucleotide sequence