Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06745 and BPHYT_RS06750 are separated by 21 nucleotides BPHYT_RS06750 and BPHYT_RS06755 are separated by 11 nucleotides BPHYT_RS06755 and BPHYT_RS06760 overlap by 4 nucleotides
BPHYT_RS06745: BPHYT_RS06745 - aminoglycoside phosphotransferase, at 1,526,699 to 1,527,805
_RS06745
BPHYT_RS06750: BPHYT_RS06750 - fructose-2,6-bisphosphatase, at 1,527,827 to 1,528,543
_RS06750
BPHYT_RS06755: BPHYT_RS06755 - enoyl-CoA hydratase, at 1,528,555 to 1,529,343
_RS06755
BPHYT_RS06760: BPHYT_RS06760 - 3-hydroxyacyl-CoA dehydrogenase, at 1,529,340 to 1,530,905
_RS06760
Position (kb) 1528
1529
1530 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1527.832 kb on + strand at 1527.832 kb on + strand at 1527.840 kb on + strand at 1527.858 kb on + strand at 1527.858 kb on + strand at 1527.859 kb on - strand at 1527.859 kb on - strand at 1527.915 kb on + strand, within BPHYT_RS06750 at 1527.915 kb on + strand, within BPHYT_RS06750 at 1527.915 kb on + strand, within BPHYT_RS06750 at 1527.916 kb on - strand, within BPHYT_RS06750 at 1527.916 kb on - strand, within BPHYT_RS06750 at 1527.916 kb on - strand, within BPHYT_RS06750 at 1528.234 kb on + strand, within BPHYT_RS06750 at 1528.479 kb on + strand at 1528.479 kb on + strand at 1528.483 kb on + strand at 1528.483 kb on + strand at 1528.533 kb on + strand at 1528.534 kb on - strand at 1529.240 kb on + strand, within BPHYT_RS06755 at 1530.136 kb on + strand, within BPHYT_RS06760 at 1530.136 kb on + strand, within BPHYT_RS06760 at 1530.149 kb on - strand, within BPHYT_RS06760 at 1530.299 kb on + strand, within BPHYT_RS06760 at 1530.300 kb on - strand, within BPHYT_RS06760 at 1530.300 kb on - strand, within BPHYT_RS06760 at 1530.341 kb on + strand, within BPHYT_RS06760
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 1,527,832 + -0.5 1,527,832 + -0.0 1,527,840 + +0.1 1,527,858 + +0.2 1,527,858 + -0.9 1,527,859 - -1.6 1,527,859 - -0.5 1,527,915 + BPHYT_RS06750 0.12 +0.4 1,527,915 + BPHYT_RS06750 0.12 -0.1 1,527,915 + BPHYT_RS06750 0.12 -0.5 1,527,916 - BPHYT_RS06750 0.12 +0.5 1,527,916 - BPHYT_RS06750 0.12 +0.6 1,527,916 - BPHYT_RS06750 0.12 -0.3 1,528,234 + BPHYT_RS06750 0.57 -0.5 1,528,479 + -0.6 1,528,479 + +0.0 1,528,483 + +0.1 1,528,483 + -0.3 1,528,533 + +0.6 1,528,534 - +1.0 1,529,240 + BPHYT_RS06755 0.87 -3.1 1,530,136 + BPHYT_RS06760 0.51 -1.1 1,530,136 + BPHYT_RS06760 0.51 -4.4 1,530,149 - BPHYT_RS06760 0.52 +0.6 1,530,299 + BPHYT_RS06760 0.61 -3.0 1,530,300 - BPHYT_RS06760 0.61 -1.2 1,530,300 - BPHYT_RS06760 0.61 -0.8 1,530,341 + BPHYT_RS06760 0.64 +1.4
Or see this region's nucleotide sequence