Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03620 and BPHYT_RS03625 overlap by 4 nucleotides BPHYT_RS03625 and BPHYT_RS03630 overlap by 8 nucleotides BPHYT_RS03630 and BPHYT_RS03635 are separated by 72 nucleotides
BPHYT_RS03620: BPHYT_RS03620 - poly(A) polymerase, at 822,634 to 824,223
_RS03620
BPHYT_RS03625: BPHYT_RS03625 - Histidinol-phosphatase (EC:3.1.3.15) <small>(from data)</small>, at 824,220 to 824,906
_RS03625
BPHYT_RS03630: BPHYT_RS03630 - DnaA regulatory inactivator Hda, at 824,899 to 825,669
_RS03630
BPHYT_RS03635: BPHYT_RS03635 - ABC transporter permease, at 825,742 to 826,818
_RS03635
Position (kb) 824
825 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.444 kb on + strand, within BPHYT_RS03620 at 823.445 kb on - strand, within BPHYT_RS03620 at 823.542 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.572 kb on - strand, within BPHYT_RS03620 at 823.574 kb on + strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 823.575 kb on - strand, within BPHYT_RS03620 at 824.198 kb on - strand at 824.354 kb on - strand, within BPHYT_RS03625 at 824.359 kb on + strand, within BPHYT_RS03625 at 824.359 kb on + strand, within BPHYT_RS03625 at 824.467 kb on + strand, within BPHYT_RS03625 at 824.468 kb on - strand, within BPHYT_RS03625 at 824.637 kb on + strand, within BPHYT_RS03625 at 824.638 kb on - strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.665 kb on + strand, within BPHYT_RS03625 at 824.701 kb on + strand, within BPHYT_RS03625 at 824.701 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.764 kb on + strand, within BPHYT_RS03625 at 824.919 kb on + strand at 825.673 kb on - strand at 825.729 kb on - strand at 825.751 kb on - strand at 825.771 kb on - strand at 825.833 kb on - strand at 825.833 kb on - strand at 825.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 823,444 + BPHYT_RS03620 0.51 -0.8 823,444 + BPHYT_RS03620 0.51 -2.4 823,445 - BPHYT_RS03620 0.51 -0.7 823,542 - BPHYT_RS03620 0.57 -1.0 823,572 - BPHYT_RS03620 0.59 -1.5 823,572 - BPHYT_RS03620 0.59 -0.1 823,572 - BPHYT_RS03620 0.59 -1.1 823,574 + BPHYT_RS03620 0.59 -0.4 823,575 - BPHYT_RS03620 0.59 -0.3 823,575 - BPHYT_RS03620 0.59 -1.2 823,575 - BPHYT_RS03620 0.59 -0.8 823,575 - BPHYT_RS03620 0.59 -1.1 824,198 - -0.9 824,354 - BPHYT_RS03625 0.20 -1.6 824,359 + BPHYT_RS03625 0.20 -1.8 824,359 + BPHYT_RS03625 0.20 -1.1 824,467 + BPHYT_RS03625 0.36 -3.3 824,468 - BPHYT_RS03625 0.36 +0.5 824,637 + BPHYT_RS03625 0.61 -2.7 824,638 - BPHYT_RS03625 0.61 -2.1 824,665 + BPHYT_RS03625 0.65 -2.0 824,665 + BPHYT_RS03625 0.65 -2.6 824,665 + BPHYT_RS03625 0.65 -1.9 824,701 + BPHYT_RS03625 0.70 -0.8 824,701 + BPHYT_RS03625 0.70 -2.3 824,764 + BPHYT_RS03625 0.79 -1.7 824,764 + BPHYT_RS03625 0.79 -2.5 824,919 + +1.0 825,673 - +0.4 825,729 - +0.0 825,751 - +0.3 825,771 - -0.2 825,833 - +0.2 825,833 - -1.0 825,833 - +0.8
Or see this region's nucleotide sequence