Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02015

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02005 and BPHYT_RS02010 are separated by 44 nucleotidesBPHYT_RS02010 and BPHYT_RS02015 are separated by 95 nucleotidesBPHYT_RS02015 and BPHYT_RS02020 are separated by 303 nucleotides BPHYT_RS02005: BPHYT_RS02005 - diguanylate phosphodiesterase, at 454,840 to 456,108 _RS02005 BPHYT_RS02010: BPHYT_RS02010 - copper homeostasis protein CutC, at 456,153 to 456,848 _RS02010 BPHYT_RS02015: BPHYT_RS02015 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data), at 456,944 to 460,531 _RS02015 BPHYT_RS02020: BPHYT_RS02020 - filamentous hemagglutinin family outer membrane protein, at 460,835 to 463,273 _RS02020 Position (kb) 456 457 458 459 460 461Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 455.950 kb on + strand, within BPHYT_RS02005at 456.153 kb on - strandat 456.355 kb on - strand, within BPHYT_RS02010at 456.355 kb on - strand, within BPHYT_RS02010at 456.370 kb on - strand, within BPHYT_RS02010at 456.854 kb on + strandat 456.859 kb on - strandat 456.859 kb on - strandat 456.859 kb on - strandat 457.454 kb on + strand, within BPHYT_RS02015at 457.466 kb on - strand, within BPHYT_RS02015at 457.614 kb on + strand, within BPHYT_RS02015at 457.614 kb on + strand, within BPHYT_RS02015at 457.614 kb on + strand, within BPHYT_RS02015at 457.615 kb on - strand, within BPHYT_RS02015at 457.615 kb on - strand, within BPHYT_RS02015at 457.629 kb on + strand, within BPHYT_RS02015at 457.629 kb on + strand, within BPHYT_RS02015at 457.630 kb on - strandat 458.113 kb on + strand, within BPHYT_RS02015at 458.341 kb on - strand, within BPHYT_RS02015at 458.490 kb on + strand, within BPHYT_RS02015at 458.491 kb on - strand, within BPHYT_RS02015at 458.935 kb on - strand, within BPHYT_RS02015at 458.947 kb on - strand, within BPHYT_RS02015at 459.006 kb on + strand, within BPHYT_RS02015at 459.190 kb on + strand, within BPHYT_RS02015at 459.191 kb on - strand, within BPHYT_RS02015at 459.191 kb on - strand, within BPHYT_RS02015at 459.191 kb on - strand, within BPHYT_RS02015at 459.441 kb on + strand, within BPHYT_RS02015at 459.442 kb on - strand, within BPHYT_RS02015at 459.442 kb on - strand, within BPHYT_RS02015at 459.447 kb on + strand, within BPHYT_RS02015at 459.447 kb on + strand, within BPHYT_RS02015at 459.447 kb on + strand, within BPHYT_RS02015at 459.447 kb on + strand, within BPHYT_RS02015at 459.448 kb on - strand, within BPHYT_RS02015at 459.448 kb on - strand, within BPHYT_RS02015at 459.448 kb on - strand, within BPHYT_RS02015at 459.568 kb on - strand, within BPHYT_RS02015at 459.568 kb on - strand, within BPHYT_RS02015at 459.907 kb on - strand, within BPHYT_RS02015at 459.948 kb on + strand, within BPHYT_RS02015at 460.485 kb on + strandat 460.486 kb on - strandat 460.549 kb on - strandat 460.823 kb on + strandat 460.836 kb on + strandat 460.837 kb on - strandat 460.861 kb on - strandat 460.867 kb on - strandat 460.881 kb on + strandat 460.894 kb on - strandat 460.900 kb on + strandat 460.901 kb on - strandat 461.186 kb on + strand, within BPHYT_RS02020at 461.187 kb on - strand, within BPHYT_RS02020at 461.246 kb on - strand, within BPHYT_RS02020at 461.310 kb on - strand, within BPHYT_RS02020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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455,950 + BPHYT_RS02005 0.87 -0.2
456,153 - -0.9
456,355 - BPHYT_RS02010 0.29 -0.6
456,355 - BPHYT_RS02010 0.29 +0.6
456,370 - BPHYT_RS02010 0.31 -0.5
456,854 + -0.2
456,859 - -0.1
456,859 - +0.3
456,859 - -0.1
457,454 + BPHYT_RS02015 0.14 -5.2
457,466 - BPHYT_RS02015 0.15 -1.8
457,614 + BPHYT_RS02015 0.19 -5.7
457,614 + BPHYT_RS02015 0.19 -6.3
457,614 + BPHYT_RS02015 0.19 -2.1
457,615 - BPHYT_RS02015 0.19 -5.4
457,615 - BPHYT_RS02015 0.19 -2.2
457,629 + BPHYT_RS02015 0.19 -4.7
457,629 + BPHYT_RS02015 0.19 -4.6
457,630 - +1.6
458,113 + BPHYT_RS02015 0.33 -4.2
458,341 - BPHYT_RS02015 0.39 -2.0
458,490 + BPHYT_RS02015 0.43 -4.0
458,491 - BPHYT_RS02015 0.43 -2.3
458,935 - BPHYT_RS02015 0.55 -6.2
458,947 - BPHYT_RS02015 0.56 -1.0
459,006 + BPHYT_RS02015 0.57 -1.9
459,190 + BPHYT_RS02015 0.63 -1.2
459,191 - BPHYT_RS02015 0.63 -5.3
459,191 - BPHYT_RS02015 0.63 -6.1
459,191 - BPHYT_RS02015 0.63 -6.7
459,441 + BPHYT_RS02015 0.70 -5.6
459,442 - BPHYT_RS02015 0.70 -4.7
459,442 - BPHYT_RS02015 0.70 -5.7
459,447 + BPHYT_RS02015 0.70 -5.7
459,447 + BPHYT_RS02015 0.70 -2.6
459,447 + BPHYT_RS02015 0.70 -1.4
459,447 + BPHYT_RS02015 0.70 -1.8
459,448 - BPHYT_RS02015 0.70 -3.1
459,448 - BPHYT_RS02015 0.70 -1.4
459,448 - BPHYT_RS02015 0.70 -1.0
459,568 - BPHYT_RS02015 0.73 -4.9
459,568 - BPHYT_RS02015 0.73 -1.6
459,907 - BPHYT_RS02015 0.83 -5.3
459,948 + BPHYT_RS02015 0.84 -5.1
460,485 + -4.4
460,486 - -3.0
460,549 - -4.5
460,823 + -0.0
460,836 + +0.2
460,837 - -0.1
460,861 - +0.1
460,867 - +0.7
460,881 + -0.0
460,894 - -0.1
460,900 + +0.1
460,901 - -2.0
461,186 + BPHYT_RS02020 0.14 -0.0
461,187 - BPHYT_RS02020 0.14 +1.6
461,246 - BPHYT_RS02020 0.17 +0.3
461,310 - BPHYT_RS02020 0.19 +0.6

Or see this region's nucleotide sequence