Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22305

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22300 and AO356_22305 are separated by 18 nucleotidesAO356_22305 and AO356_22310 are separated by 245 nucleotidesAO356_22310 and AO356_22315 are separated by 163 nucleotides AO356_22300: AO356_22300 - MFS transporter, at 4,987,536 to 4,988,768 _22300 AO356_22305: AO356_22305 - alginate lyase, at 4,988,787 to 4,989,443 _22305 AO356_22310: AO356_22310 - hypothetical protein, at 4,989,689 to 4,990,024 _22310 AO356_22315: AO356_22315 - lactate permease, at 4,990,188 to 4,991,951 _22315 Position (kb) 4988 4989 4990Strain fitness (log2 ratio) -2 -1 0 1 2at 4987.788 kb on + strand, within AO356_22300at 4987.789 kb on - strand, within AO356_22300at 4987.797 kb on + strand, within AO356_22300at 4987.830 kb on + strand, within AO356_22300at 4987.831 kb on - strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.834 kb on + strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.835 kb on - strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.842 kb on + strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.843 kb on - strand, within AO356_22300at 4987.854 kb on + strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4987.855 kb on - strand, within AO356_22300at 4988.033 kb on + strand, within AO356_22300at 4988.034 kb on - strand, within AO356_22300at 4988.034 kb on - strand, within AO356_22300at 4988.076 kb on + strand, within AO356_22300at 4988.076 kb on + strand, within AO356_22300at 4988.185 kb on - strand, within AO356_22300at 4988.235 kb on + strand, within AO356_22300at 4988.235 kb on + strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.236 kb on - strand, within AO356_22300at 4988.239 kb on - strand, within AO356_22300at 4988.409 kb on + strand, within AO356_22300at 4988.409 kb on + strand, within AO356_22300at 4988.410 kb on - strand, within AO356_22300at 4988.410 kb on - strand, within AO356_22300at 4988.410 kb on - strand, within AO356_22300at 4988.425 kb on - strand, within AO356_22300at 4988.488 kb on - strand, within AO356_22300at 4988.518 kb on - strand, within AO356_22300at 4988.583 kb on + strand, within AO356_22300at 4988.583 kb on + strand, within AO356_22300at 4988.583 kb on + strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.584 kb on - strand, within AO356_22300at 4988.815 kb on + strandat 4988.816 kb on - strandat 4988.842 kb on + strandat 4988.863 kb on + strand, within AO356_22305at 4988.863 kb on + strand, within AO356_22305at 4988.863 kb on + strand, within AO356_22305at 4988.864 kb on - strand, within AO356_22305at 4988.881 kb on + strand, within AO356_22305at 4988.882 kb on - strand, within AO356_22305at 4988.882 kb on - strand, within AO356_22305at 4988.888 kb on + strand, within AO356_22305at 4988.888 kb on + strand, within AO356_22305at 4988.889 kb on - strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.890 kb on + strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.891 kb on - strand, within AO356_22305at 4988.897 kb on - strand, within AO356_22305at 4988.980 kb on + strand, within AO356_22305at 4989.019 kb on + strand, within AO356_22305at 4989.019 kb on + strand, within AO356_22305at 4989.020 kb on - strand, within AO356_22305at 4989.020 kb on - strand, within AO356_22305at 4989.020 kb on - strand, within AO356_22305at 4989.097 kb on + strand, within AO356_22305at 4989.220 kb on + strand, within AO356_22305at 4989.221 kb on - strand, within AO356_22305at 4989.287 kb on + strand, within AO356_22305at 4989.287 kb on + strand, within AO356_22305at 4989.288 kb on - strand, within AO356_22305at 4989.349 kb on + strand, within AO356_22305at 4989.349 kb on + strand, within AO356_22305at 4989.349 kb on + strand, within AO356_22305at 4989.350 kb on - strand, within AO356_22305at 4989.350 kb on - strand, within AO356_22305at 4989.417 kb on - strandat 4989.417 kb on - strandat 4989.446 kb on + strandat 4989.446 kb on + strandat 4989.446 kb on + strandat 4989.447 kb on - strandat 4989.447 kb on - strandat 4989.447 kb on - strandat 4989.525 kb on - strandat 4989.620 kb on + strandat 4989.621 kb on - strandat 4989.621 kb on - strandat 4989.635 kb on - strandat 4989.639 kb on + strandat 4989.686 kb on + strandat 4989.686 kb on + strandat 4989.687 kb on - strandat 4989.776 kb on + strand, within AO356_22310at 4989.776 kb on + strand, within AO356_22310at 4989.777 kb on - strand, within AO356_22310at 4989.777 kb on - strand, within AO356_22310at 4989.777 kb on - strand, within AO356_22310at 4989.975 kb on - strand, within AO356_22310at 4990.023 kb on - strandat 4990.060 kb on + strandat 4990.060 kb on + strandat 4990.061 kb on - strandat 4990.061 kb on - strandat 4990.061 kb on - strandat 4990.171 kb on - strandat 4990.171 kb on - strandat 4990.208 kb on + strandat 4990.209 kb on - strandat 4990.209 kb on - strandat 4990.209 kb on - strandat 4990.228 kb on + strandat 4990.228 kb on + strandat 4990.228 kb on + strandat 4990.228 kb on + strandat 4990.229 kb on - strandat 4990.291 kb on + strandat 4990.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,987,788 + AO356_22300 0.20 -0.0
4,987,789 - AO356_22300 0.21 +0.6
4,987,797 + AO356_22300 0.21 -0.5
4,987,830 + AO356_22300 0.24 -0.3
4,987,831 - AO356_22300 0.24 -0.8
4,987,834 + AO356_22300 0.24 -0.1
4,987,834 + AO356_22300 0.24 -0.2
4,987,834 + AO356_22300 0.24 +0.1
4,987,834 + AO356_22300 0.24 -0.2
4,987,835 - AO356_22300 0.24 -0.3
4,987,835 - AO356_22300 0.24 +0.7
4,987,835 - AO356_22300 0.24 -0.0
4,987,835 - AO356_22300 0.24 +0.2
4,987,835 - AO356_22300 0.24 -0.0
4,987,835 - AO356_22300 0.24 +0.8
4,987,835 - AO356_22300 0.24 -0.4
4,987,835 - AO356_22300 0.24 +0.3
4,987,842 + AO356_22300 0.25 -0.4
4,987,842 + AO356_22300 0.25 +0.0
4,987,842 + AO356_22300 0.25 -0.2
4,987,842 + AO356_22300 0.25 -0.9
4,987,842 + AO356_22300 0.25 -0.1
4,987,842 + AO356_22300 0.25 -0.7
4,987,843 - AO356_22300 0.25 -0.3
4,987,843 - AO356_22300 0.25 +0.3
4,987,843 - AO356_22300 0.25 +1.0
4,987,843 - AO356_22300 0.25 -1.1
4,987,843 - AO356_22300 0.25 -0.8
4,987,843 - AO356_22300 0.25 -0.3
4,987,854 + AO356_22300 0.26 +1.4
4,987,855 - AO356_22300 0.26 -0.3
4,987,855 - AO356_22300 0.26 +0.7
4,987,855 - AO356_22300 0.26 -0.1
4,987,855 - AO356_22300 0.26 +0.2
4,987,855 - AO356_22300 0.26 +0.6
4,988,033 + AO356_22300 0.40 -0.6
4,988,034 - AO356_22300 0.40 -0.9
4,988,034 - AO356_22300 0.40 -0.8
4,988,076 + AO356_22300 0.44 +0.8
4,988,076 + AO356_22300 0.44 +0.1
4,988,185 - AO356_22300 0.53 +0.5
4,988,235 + AO356_22300 0.57 +0.1
4,988,235 + AO356_22300 0.57 -0.3
4,988,236 - AO356_22300 0.57 +0.4
4,988,236 - AO356_22300 0.57 -0.3
4,988,236 - AO356_22300 0.57 -0.1
4,988,239 - AO356_22300 0.57 +0.7
4,988,409 + AO356_22300 0.71 -0.7
4,988,409 + AO356_22300 0.71 +0.7
4,988,410 - AO356_22300 0.71 -0.5
4,988,410 - AO356_22300 0.71 -0.3
4,988,410 - AO356_22300 0.71 -0.6
4,988,425 - AO356_22300 0.72 -0.2
4,988,488 - AO356_22300 0.77 +0.1
4,988,518 - AO356_22300 0.80 -2.7
4,988,583 + AO356_22300 0.85 +0.3
4,988,583 + AO356_22300 0.85 -0.3
4,988,583 + AO356_22300 0.85 -0.0
4,988,584 - AO356_22300 0.85 -1.2
4,988,584 - AO356_22300 0.85 +0.4
4,988,584 - AO356_22300 0.85 -0.7
4,988,584 - AO356_22300 0.85 -0.2
4,988,584 - AO356_22300 0.85 -0.6
4,988,584 - AO356_22300 0.85 -0.6
4,988,815 + -0.1
4,988,816 - -0.2
4,988,842 + -0.2
4,988,863 + AO356_22305 0.12 -0.3
4,988,863 + AO356_22305 0.12 +1.1
4,988,863 + AO356_22305 0.12 +0.9
4,988,864 - AO356_22305 0.12 +1.5
4,988,881 + AO356_22305 0.14 +0.4
4,988,882 - AO356_22305 0.14 -0.6
4,988,882 - AO356_22305 0.14 -0.2
4,988,888 + AO356_22305 0.15 +0.8
4,988,888 + AO356_22305 0.15 -0.1
4,988,889 - AO356_22305 0.16 +1.0
4,988,890 + AO356_22305 0.16 +0.7
4,988,890 + AO356_22305 0.16 +1.4
4,988,890 + AO356_22305 0.16 +0.5
4,988,890 + AO356_22305 0.16 +0.2
4,988,890 + AO356_22305 0.16 -0.2
4,988,890 + AO356_22305 0.16 +0.7
4,988,891 - AO356_22305 0.16 -0.2
4,988,891 - AO356_22305 0.16 +0.4
4,988,891 - AO356_22305 0.16 +1.8
4,988,891 - AO356_22305 0.16 +0.9
4,988,897 - AO356_22305 0.17 +0.4
4,988,980 + AO356_22305 0.29 +1.1
4,989,019 + AO356_22305 0.35 +0.0
4,989,019 + AO356_22305 0.35 +0.2
4,989,020 - AO356_22305 0.35 -0.9
4,989,020 - AO356_22305 0.35 +0.2
4,989,020 - AO356_22305 0.35 -0.5
4,989,097 + AO356_22305 0.47 +0.6
4,989,220 + AO356_22305 0.66 +0.5
4,989,221 - AO356_22305 0.66 +0.4
4,989,287 + AO356_22305 0.76 -0.2
4,989,287 + AO356_22305 0.76 +0.5
4,989,288 - AO356_22305 0.76 -0.1
4,989,349 + AO356_22305 0.86 -0.0
4,989,349 + AO356_22305 0.86 +0.8
4,989,349 + AO356_22305 0.86 -0.3
4,989,350 - AO356_22305 0.86 +0.2
4,989,350 - AO356_22305 0.86 +0.5
4,989,417 - +2.0
4,989,417 - -0.5
4,989,446 + +0.2
4,989,446 + -0.8
4,989,446 + +0.0
4,989,447 - +2.6
4,989,447 - -0.1
4,989,447 - -0.8
4,989,525 - -0.3
4,989,620 + -1.8
4,989,621 - +0.4
4,989,621 - -0.1
4,989,635 - -0.3
4,989,639 + +0.4
4,989,686 + -0.0
4,989,686 + +0.5
4,989,687 - -0.0
4,989,776 + AO356_22310 0.26 -0.1
4,989,776 + AO356_22310 0.26 -0.3
4,989,777 - AO356_22310 0.26 +0.4
4,989,777 - AO356_22310 0.26 +0.5
4,989,777 - AO356_22310 0.26 +0.5
4,989,975 - AO356_22310 0.85 -0.9
4,990,023 - +1.2
4,990,060 + -0.6
4,990,060 + -0.1
4,990,061 - +0.7
4,990,061 - -0.8
4,990,061 - +0.8
4,990,171 - +0.2
4,990,171 - +0.1
4,990,208 + -0.3
4,990,209 - -0.9
4,990,209 - -0.3
4,990,209 - -0.0
4,990,228 + +0.5
4,990,228 + +0.6
4,990,228 + -0.1
4,990,228 + +1.5
4,990,229 - +1.9
4,990,291 + +0.9
4,990,291 + -0.2

Or see this region's nucleotide sequence