Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08145

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08140 and AO356_08145 are separated by 3 nucleotidesAO356_08145 and AO356_08150 overlap by 4 nucleotides AO356_08140: AO356_08140 - MATE family efflux transporter, at 1,820,260 to 1,821,609 _08140 AO356_08145: AO356_08145 - hypothetical protein, at 1,821,613 to 1,822,407 _08145 AO356_08150: AO356_08150 - type VI secretion protein, at 1,822,404 to 1,823,711 _08150 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -2 -1 0 1at 1820.714 kb on - strand, within AO356_08140at 1820.714 kb on - strand, within AO356_08140at 1821.315 kb on - strand, within AO356_08140at 1821.328 kb on + strand, within AO356_08140at 1821.328 kb on + strand, within AO356_08140at 1821.334 kb on + strand, within AO356_08140at 1821.335 kb on - strand, within AO356_08140at 1821.335 kb on - strand, within AO356_08140at 1821.343 kb on + strand, within AO356_08140at 1821.379 kb on + strand, within AO356_08140at 1821.380 kb on - strand, within AO356_08140at 1821.380 kb on - strand, within AO356_08140at 1821.608 kb on - strandat 1821.800 kb on + strand, within AO356_08145at 1822.052 kb on + strand, within AO356_08145at 1822.053 kb on - strand, within AO356_08145at 1822.053 kb on - strand, within AO356_08145at 1822.073 kb on + strand, within AO356_08145at 1822.073 kb on + strand, within AO356_08145at 1822.074 kb on - strand, within AO356_08145at 1822.357 kb on + strandat 1822.357 kb on + strandat 1822.771 kb on + strand, within AO356_08150at 1822.771 kb on + strand, within AO356_08150at 1822.772 kb on - strand, within AO356_08150at 1822.933 kb on + strand, within AO356_08150at 1822.933 kb on + strand, within AO356_08150at 1822.934 kb on - strand, within AO356_08150at 1822.934 kb on - strand, within AO356_08150at 1822.934 kb on - strand, within AO356_08150at 1822.934 kb on - strand, within AO356_08150at 1823.135 kb on - strand, within AO356_08150

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,820,714 - AO356_08140 0.34 -0.3
1,820,714 - AO356_08140 0.34 +1.1
1,821,315 - AO356_08140 0.78 +0.4
1,821,328 + AO356_08140 0.79 +0.2
1,821,328 + AO356_08140 0.79 -0.3
1,821,334 + AO356_08140 0.80 +0.3
1,821,335 - AO356_08140 0.80 +0.2
1,821,335 - AO356_08140 0.80 -0.5
1,821,343 + AO356_08140 0.80 -0.7
1,821,379 + AO356_08140 0.83 +0.1
1,821,380 - AO356_08140 0.83 +0.5
1,821,380 - AO356_08140 0.83 -0.3
1,821,608 - +0.3
1,821,800 + AO356_08145 0.24 +0.1
1,822,052 + AO356_08145 0.55 -1.2
1,822,053 - AO356_08145 0.55 +0.6
1,822,053 - AO356_08145 0.55 +0.7
1,822,073 + AO356_08145 0.58 -0.1
1,822,073 + AO356_08145 0.58 -0.5
1,822,074 - AO356_08145 0.58 -1.8
1,822,357 + +0.5
1,822,357 + +1.2
1,822,771 + AO356_08150 0.28 +1.3
1,822,771 + AO356_08150 0.28 -0.3
1,822,772 - AO356_08150 0.28 +0.4
1,822,933 + AO356_08150 0.40 +0.1
1,822,933 + AO356_08150 0.40 -0.3
1,822,934 - AO356_08150 0.41 +1.6
1,822,934 - AO356_08150 0.41 -0.1
1,822,934 - AO356_08150 0.41 +0.4
1,822,934 - AO356_08150 0.41 -0.4
1,823,135 - AO356_08150 0.56 +0.4

Or see this region's nucleotide sequence