Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04485 and ABIE51_RS04490 are separated by 195 nucleotides ABIE51_RS04490 and ABIE51_RS04495 are separated by 29 nucleotides ABIE51_RS04495 and ABIE51_RS04500 are separated by 622 nucleotides
ABIE51_RS04485: ABIE51_RS04485 - LPS export ABC transporter permease LptG, at 967,470 to 968,570
_RS04485
ABIE51_RS04490: ABIE51_RS04490 - RDD family protein, at 968,766 to 969,233
_RS04490
ABIE51_RS04495: ABIE51_RS04495 - site-specific tyrosine recombinase XerD, at 969,263 to 970,216
_RS04495
ABIE51_RS04500: ABIE51_RS04500 - DsbC family protein, at 970,839 to 971,693
_RS04500
Position (kb) 969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 968.536 kb on + strand at 968.686 kb on + strand at 968.686 kb on + strand at 968.686 kb on + strand at 968.686 kb on + strand at 968.687 kb on - strand at 968.745 kb on + strand at 968.767 kb on + strand at 968.767 kb on + strand at 968.767 kb on + strand at 968.768 kb on - strand at 968.768 kb on - strand at 968.819 kb on + strand, within ABIE51_RS04490 at 968.819 kb on + strand, within ABIE51_RS04490 at 968.819 kb on + strand, within ABIE51_RS04490 at 968.820 kb on - strand, within ABIE51_RS04490 at 968.820 kb on - strand, within ABIE51_RS04490 at 968.820 kb on - strand, within ABIE51_RS04490 at 968.820 kb on - strand, within ABIE51_RS04490 at 968.820 kb on - strand, within ABIE51_RS04490 at 968.871 kb on + strand, within ABIE51_RS04490 at 968.872 kb on - strand, within ABIE51_RS04490 at 969.010 kb on + strand, within ABIE51_RS04490 at 969.010 kb on + strand, within ABIE51_RS04490 at 969.010 kb on + strand, within ABIE51_RS04490 at 969.166 kb on + strand, within ABIE51_RS04490 at 969.166 kb on + strand, within ABIE51_RS04490 at 969.167 kb on - strand, within ABIE51_RS04490 at 969.404 kb on + strand, within ABIE51_RS04495 at 969.404 kb on + strand, within ABIE51_RS04495 at 969.404 kb on + strand, within ABIE51_RS04495 at 969.404 kb on + strand, within ABIE51_RS04495 at 969.404 kb on + strand, within ABIE51_RS04495 at 969.405 kb on - strand, within ABIE51_RS04495 at 969.405 kb on - strand, within ABIE51_RS04495 at 969.405 kb on - strand, within ABIE51_RS04495 at 969.491 kb on + strand, within ABIE51_RS04495 at 969.492 kb on - strand, within ABIE51_RS04495 at 969.519 kb on - strand, within ABIE51_RS04495 at 969.566 kb on + strand, within ABIE51_RS04495 at 969.567 kb on - strand, within ABIE51_RS04495 at 969.746 kb on + strand, within ABIE51_RS04495 at 969.746 kb on + strand, within ABIE51_RS04495 at 969.747 kb on - strand, within ABIE51_RS04495 at 969.747 kb on - strand, within ABIE51_RS04495 at 969.894 kb on - strand, within ABIE51_RS04495 at 970.154 kb on + strand at 970.154 kb on + strand at 970.154 kb on + strand at 970.346 kb on - strand at 970.346 kb on - strand at 971.104 kb on - strand, within ABIE51_RS04500 at 971.104 kb on - strand, within ABIE51_RS04500 at 971.104 kb on - strand, within ABIE51_RS04500 at 971.124 kb on + strand, within ABIE51_RS04500 at 971.124 kb on + strand, within ABIE51_RS04500 at 971.124 kb on + strand, within ABIE51_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 968,536 + -0.6 968,686 + -0.1 968,686 + -1.5 968,686 + +0.4 968,686 + +1.0 968,687 - -0.4 968,745 + -0.6 968,767 + +1.8 968,767 + +1.2 968,767 + +0.0 968,768 - -0.1 968,768 - +3.0 968,819 + ABIE51_RS04490 0.11 -0.2 968,819 + ABIE51_RS04490 0.11 -1.0 968,819 + ABIE51_RS04490 0.11 +0.6 968,820 - ABIE51_RS04490 0.12 +0.5 968,820 - ABIE51_RS04490 0.12 -1.0 968,820 - ABIE51_RS04490 0.12 -1.4 968,820 - ABIE51_RS04490 0.12 +0.9 968,820 - ABIE51_RS04490 0.12 +0.8 968,871 + ABIE51_RS04490 0.22 +0.8 968,872 - ABIE51_RS04490 0.23 +1.4 969,010 + ABIE51_RS04490 0.52 +2.0 969,010 + ABIE51_RS04490 0.52 -0.8 969,010 + ABIE51_RS04490 0.52 -0.3 969,166 + ABIE51_RS04490 0.85 -2.3 969,166 + ABIE51_RS04490 0.85 +0.7 969,167 - ABIE51_RS04490 0.86 +0.7 969,404 + ABIE51_RS04495 0.15 +0.2 969,404 + ABIE51_RS04495 0.15 +3.0 969,404 + ABIE51_RS04495 0.15 -0.5 969,404 + ABIE51_RS04495 0.15 +0.7 969,404 + ABIE51_RS04495 0.15 -0.7 969,405 - ABIE51_RS04495 0.15 +1.6 969,405 - ABIE51_RS04495 0.15 -0.0 969,405 - ABIE51_RS04495 0.15 +1.7 969,491 + ABIE51_RS04495 0.24 +0.7 969,492 - ABIE51_RS04495 0.24 +3.0 969,519 - ABIE51_RS04495 0.27 -0.0 969,566 + ABIE51_RS04495 0.32 +1.5 969,567 - ABIE51_RS04495 0.32 +1.6 969,746 + ABIE51_RS04495 0.51 +4.0 969,746 + ABIE51_RS04495 0.51 -0.1 969,747 - ABIE51_RS04495 0.51 +1.0 969,747 - ABIE51_RS04495 0.51 -0.3 969,894 - ABIE51_RS04495 0.66 +1.6 970,154 + -0.5 970,154 + +1.8 970,154 + +0.4 970,346 - +0.7 970,346 - +1.1 971,104 - ABIE51_RS04500 0.31 +0.4 971,104 - ABIE51_RS04500 0.31 +0.5 971,104 - ABIE51_RS04500 0.31 -1.2 971,124 + ABIE51_RS04500 0.33 -0.7 971,124 + ABIE51_RS04500 0.33 -0.6 971,124 + ABIE51_RS04500 0.33 +1.2
Or see this region's nucleotide sequence