Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03240

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03235 and ABIE51_RS03240 overlap by 4 nucleotidesABIE51_RS03240 and ABIE51_RS03245 are separated by 228 nucleotides ABIE51_RS03235: ABIE51_RS03235 - leucyl aminopeptidase family protein, at 716,995 to 718,374 _RS03235 ABIE51_RS03240: ABIE51_RS03240 - HAD-IA family hydrolase, at 718,371 to 719,087 _RS03240 ABIE51_RS03245: ABIE51_RS03245 - AI-2E family transporter, at 719,316 to 720,449 _RS03245 Position (kb) 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 717.413 kb on + strand, within ABIE51_RS03235at 717.413 kb on + strand, within ABIE51_RS03235at 717.413 kb on + strand, within ABIE51_RS03235at 717.413 kb on + strand, within ABIE51_RS03235at 717.413 kb on + strand, within ABIE51_RS03235at 717.413 kb on + strand, within ABIE51_RS03235at 717.413 kb on + strand, within ABIE51_RS03235at 717.414 kb on - strand, within ABIE51_RS03235at 717.414 kb on - strand, within ABIE51_RS03235at 718.034 kb on + strand, within ABIE51_RS03235at 718.035 kb on - strand, within ABIE51_RS03235at 718.124 kb on + strand, within ABIE51_RS03235at 718.139 kb on + strand, within ABIE51_RS03235at 718.140 kb on - strand, within ABIE51_RS03235at 718.140 kb on - strand, within ABIE51_RS03235at 718.768 kb on + strand, within ABIE51_RS03240at 718.768 kb on + strand, within ABIE51_RS03240at 718.768 kb on + strand, within ABIE51_RS03240at 718.768 kb on + strand, within ABIE51_RS03240at 718.795 kb on + strand, within ABIE51_RS03240at 718.796 kb on - strand, within ABIE51_RS03240at 718.796 kb on - strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.915 kb on + strand, within ABIE51_RS03240at 718.916 kb on - strand, within ABIE51_RS03240at 718.916 kb on - strand, within ABIE51_RS03240at 718.916 kb on - strand, within ABIE51_RS03240at 718.916 kb on - strand, within ABIE51_RS03240at 718.916 kb on - strand, within ABIE51_RS03240at 718.916 kb on - strand, within ABIE51_RS03240at 719.099 kb on - strandat 719.168 kb on + strandat 719.168 kb on + strandat 719.246 kb on + strandat 719.246 kb on + strandat 719.246 kb on + strandat 719.246 kb on + strandat 719.247 kb on - strandat 719.247 kb on - strandat 719.247 kb on - strandat 719.533 kb on + strand, within ABIE51_RS03245at 719.533 kb on + strand, within ABIE51_RS03245at 719.626 kb on + strand, within ABIE51_RS03245at 719.626 kb on + strand, within ABIE51_RS03245at 719.626 kb on + strand, within ABIE51_RS03245at 719.627 kb on - strand, within ABIE51_RS03245at 719.698 kb on + strand, within ABIE51_RS03245at 719.698 kb on + strand, within ABIE51_RS03245at 719.698 kb on + strand, within ABIE51_RS03245at 719.699 kb on - strand, within ABIE51_RS03245at 719.758 kb on + strand, within ABIE51_RS03245at 719.758 kb on + strand, within ABIE51_RS03245at 719.759 kb on - strand, within ABIE51_RS03245at 719.759 kb on - strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 720.052 kb on + strand, within ABIE51_RS03245at 720.052 kb on + strand, within ABIE51_RS03245at 720.053 kb on - strand, within ABIE51_RS03245

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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717,413 + ABIE51_RS03235 0.30 +0.9
717,413 + ABIE51_RS03235 0.30 +0.6
717,413 + ABIE51_RS03235 0.30 -1.6
717,413 + ABIE51_RS03235 0.30 -1.7
717,413 + ABIE51_RS03235 0.30 -1.4
717,413 + ABIE51_RS03235 0.30 -0.3
717,413 + ABIE51_RS03235 0.30 -0.6
717,414 - ABIE51_RS03235 0.30 -1.3
717,414 - ABIE51_RS03235 0.30 +0.2
718,034 + ABIE51_RS03235 0.75 -0.6
718,035 - ABIE51_RS03235 0.75 +0.3
718,124 + ABIE51_RS03235 0.82 -0.4
718,139 + ABIE51_RS03235 0.83 +0.7
718,140 - ABIE51_RS03235 0.83 -0.5
718,140 - ABIE51_RS03235 0.83 +0.9
718,768 + ABIE51_RS03240 0.55 -0.7
718,768 + ABIE51_RS03240 0.55 -0.7
718,768 + ABIE51_RS03240 0.55 -0.7
718,768 + ABIE51_RS03240 0.55 -0.3
718,795 + ABIE51_RS03240 0.59 +0.4
718,796 - ABIE51_RS03240 0.59 +0.8
718,796 - ABIE51_RS03240 0.59 -0.5
718,915 + ABIE51_RS03240 0.76 +0.1
718,915 + ABIE51_RS03240 0.76 +1.4
718,915 + ABIE51_RS03240 0.76 +1.0
718,915 + ABIE51_RS03240 0.76 -0.6
718,915 + ABIE51_RS03240 0.76 -0.1
718,915 + ABIE51_RS03240 0.76 +0.6
718,915 + ABIE51_RS03240 0.76 -0.2
718,915 + ABIE51_RS03240 0.76 -0.2
718,915 + ABIE51_RS03240 0.76 -0.4
718,915 + ABIE51_RS03240 0.76 +0.5
718,915 + ABIE51_RS03240 0.76 -0.3
718,916 - ABIE51_RS03240 0.76 -1.0
718,916 - ABIE51_RS03240 0.76 -1.2
718,916 - ABIE51_RS03240 0.76 -0.7
718,916 - ABIE51_RS03240 0.76 -0.3
718,916 - ABIE51_RS03240 0.76 +0.3
718,916 - ABIE51_RS03240 0.76 -0.7
719,099 - -0.8
719,168 + +1.2
719,168 + -0.2
719,246 + +0.2
719,246 + +0.9
719,246 + +0.6
719,246 + -1.8
719,247 - -1.1
719,247 - +0.7
719,247 - +1.8
719,533 + ABIE51_RS03245 0.19 -0.9
719,533 + ABIE51_RS03245 0.19 -0.7
719,626 + ABIE51_RS03245 0.27 +0.4
719,626 + ABIE51_RS03245 0.27 -1.1
719,626 + ABIE51_RS03245 0.27 +0.3
719,627 - ABIE51_RS03245 0.27 +0.1
719,698 + ABIE51_RS03245 0.34 -0.0
719,698 + ABIE51_RS03245 0.34 -0.5
719,698 + ABIE51_RS03245 0.34 +0.5
719,699 - ABIE51_RS03245 0.34 -0.6
719,758 + ABIE51_RS03245 0.39 +0.3
719,758 + ABIE51_RS03245 0.39 -0.4
719,759 - ABIE51_RS03245 0.39 -1.5
719,759 - ABIE51_RS03245 0.39 -0.2
719,863 + ABIE51_RS03245 0.48 -1.1
719,863 + ABIE51_RS03245 0.48 -0.2
719,863 + ABIE51_RS03245 0.48 +1.2
719,863 + ABIE51_RS03245 0.48 -2.1
719,863 + ABIE51_RS03245 0.48 -0.7
719,863 + ABIE51_RS03245 0.48 -0.5
719,863 + ABIE51_RS03245 0.48 +1.1
719,863 + ABIE51_RS03245 0.48 +1.4
719,864 - ABIE51_RS03245 0.48 +0.0
719,864 - ABIE51_RS03245 0.48 +0.8
719,864 - ABIE51_RS03245 0.48 +0.4
719,864 - ABIE51_RS03245 0.48 -1.5
719,864 - ABIE51_RS03245 0.48 +0.7
719,864 - ABIE51_RS03245 0.48 -0.5
719,864 - ABIE51_RS03245 0.48 -1.1
719,864 - ABIE51_RS03245 0.48 -0.4
719,941 + ABIE51_RS03245 0.55 -1.8
719,941 + ABIE51_RS03245 0.55 -0.1
719,941 + ABIE51_RS03245 0.55 +0.6
719,941 + ABIE51_RS03245 0.55 +0.8
719,941 + ABIE51_RS03245 0.55 -0.6
719,942 - ABIE51_RS03245 0.55 +0.4
719,942 - ABIE51_RS03245 0.55 +0.1
719,942 - ABIE51_RS03245 0.55 -0.2
719,942 - ABIE51_RS03245 0.55 -0.2
719,942 - ABIE51_RS03245 0.55 +0.6
720,052 + ABIE51_RS03245 0.65 +0.5
720,052 + ABIE51_RS03245 0.65 +0.1
720,053 - ABIE51_RS03245 0.65 +1.5

Or see this region's nucleotide sequence