Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03020 and ABIE51_RS03025 are separated by 12 nucleotides ABIE51_RS03025 and ABIE51_RS03030 overlap by 8 nucleotides ABIE51_RS03030 and ABIE51_RS03035 are separated by 73 nucleotides
ABIE51_RS03020: ABIE51_RS03020 - lipoprotein, at 671,505 to 671,780
_RS03020
ABIE51_RS03025: ABIE51_RS03025 - diaminopimelate epimerase, at 671,793 to 672,638
_RS03025
ABIE51_RS03030: ABIE51_RS03030 - DUF484 family protein, at 672,631 to 673,305
_RS03030
ABIE51_RS03035: ABIE51_RS03035 - tyrosine recombinase XerC, at 673,379 to 674,293
_RS03035
Position (kb) 672
673
674 Strain fitness (log2 ratio) -1
0
1
2
3 at 672.775 kb on + strand, within ABIE51_RS03030 at 672.776 kb on - strand, within ABIE51_RS03030 at 672.840 kb on + strand, within ABIE51_RS03030 at 673.132 kb on + strand, within ABIE51_RS03030 at 673.132 kb on + strand, within ABIE51_RS03030 at 673.427 kb on + strand at 673.427 kb on + strand at 673.427 kb on + strand at 673.427 kb on + strand at 673.428 kb on - strand at 673.643 kb on + strand, within ABIE51_RS03035 at 673.643 kb on + strand, within ABIE51_RS03035 at 673.643 kb on + strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.791 kb on + strand, within ABIE51_RS03035 at 673.820 kb on + strand, within ABIE51_RS03035 at 673.821 kb on - strand, within ABIE51_RS03035 at 674.166 kb on + strand, within ABIE51_RS03035 at 674.210 kb on + strand at 674.210 kb on + strand at 674.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 672,775 + ABIE51_RS03030 0.21 -0.1 672,776 - ABIE51_RS03030 0.21 +0.4 672,840 + ABIE51_RS03030 0.31 +0.5 673,132 + ABIE51_RS03030 0.74 +0.1 673,132 + ABIE51_RS03030 0.74 -0.0 673,427 + +0.2 673,427 + +0.3 673,427 + +2.0 673,427 + +0.4 673,428 - +3.2 673,643 + ABIE51_RS03035 0.29 -0.0 673,643 + ABIE51_RS03035 0.29 +2.1 673,643 + ABIE51_RS03035 0.29 +0.4 673,644 - ABIE51_RS03035 0.29 +0.6 673,644 - ABIE51_RS03035 0.29 +0.6 673,644 - ABIE51_RS03035 0.29 +0.4 673,644 - ABIE51_RS03035 0.29 +1.3 673,644 - ABIE51_RS03035 0.29 +1.0 673,644 - ABIE51_RS03035 0.29 +1.2 673,644 - ABIE51_RS03035 0.29 -0.7 673,791 + ABIE51_RS03035 0.45 +0.5 673,820 + ABIE51_RS03035 0.48 +0.2 673,821 - ABIE51_RS03035 0.48 -0.3 674,166 + ABIE51_RS03035 0.86 -1.7 674,210 + +1.0 674,210 + -0.9 674,226 - +2.0
Or see this region's nucleotide sequence