Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01060 and ABIE51_RS01065 are separated by 88 nucleotides ABIE51_RS01065 and ABIE51_RS01070 overlap by 7 nucleotides
ABIE51_RS01060: ABIE51_RS01060 - multidrug efflux RND transporter permease subunit, at 225,723 to 228,902
_RS01060
ABIE51_RS01065: ABIE51_RS01065 - SDR family oxidoreductase, at 228,991 to 229,740
_RS01065
ABIE51_RS01070: ABIE51_RS01070 - efflux transporter outer membrane subunit, at 229,734 to 231,221
_RS01070
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 227.991 kb on + strand, within ABIE51_RS01060 at 227.991 kb on + strand, within ABIE51_RS01060 at 227.991 kb on + strand, within ABIE51_RS01060 at 227.992 kb on - strand, within ABIE51_RS01060 at 227.992 kb on - strand, within ABIE51_RS01060 at 228.006 kb on + strand, within ABIE51_RS01060 at 228.006 kb on + strand, within ABIE51_RS01060 at 228.006 kb on + strand, within ABIE51_RS01060 at 228.007 kb on - strand, within ABIE51_RS01060 at 228.190 kb on - strand, within ABIE51_RS01060 at 228.331 kb on - strand, within ABIE51_RS01060 at 228.331 kb on - strand, within ABIE51_RS01060 at 228.414 kb on + strand, within ABIE51_RS01060 at 228.415 kb on - strand, within ABIE51_RS01060 at 228.489 kb on + strand, within ABIE51_RS01060 at 228.490 kb on - strand, within ABIE51_RS01060 at 228.605 kb on + strand at 228.810 kb on + strand at 228.811 kb on - strand at 228.811 kb on - strand at 229.481 kb on - strand, within ABIE51_RS01065 at 229.481 kb on - strand, within ABIE51_RS01065 at 229.504 kb on + strand, within ABIE51_RS01065 at 229.504 kb on + strand, within ABIE51_RS01065 at 229.504 kb on + strand, within ABIE51_RS01065 at 229.534 kb on + strand, within ABIE51_RS01065 at 229.552 kb on + strand, within ABIE51_RS01065 at 229.553 kb on - strand, within ABIE51_RS01065 at 229.709 kb on - strand at 229.714 kb on + strand at 229.714 kb on + strand at 229.715 kb on - strand at 229.715 kb on - strand at 229.715 kb on - strand at 229.803 kb on + strand at 229.803 kb on + strand at 230.028 kb on + strand, within ABIE51_RS01070 at 230.169 kb on + strand, within ABIE51_RS01070 at 230.169 kb on + strand, within ABIE51_RS01070 at 230.169 kb on + strand, within ABIE51_RS01070 at 230.170 kb on - strand, within ABIE51_RS01070 at 230.208 kb on + strand, within ABIE51_RS01070 at 230.209 kb on - strand, within ABIE51_RS01070 at 230.209 kb on - strand, within ABIE51_RS01070 at 230.316 kb on + strand, within ABIE51_RS01070 at 230.316 kb on + strand, within ABIE51_RS01070 at 230.317 kb on - strand, within ABIE51_RS01070 at 230.317 kb on - strand, within ABIE51_RS01070 at 230.438 kb on + strand, within ABIE51_RS01070
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 227,991 + ABIE51_RS01060 0.71 +0.6 227,991 + ABIE51_RS01060 0.71 +1.5 227,991 + ABIE51_RS01060 0.71 -0.4 227,992 - ABIE51_RS01060 0.71 +0.5 227,992 - ABIE51_RS01060 0.71 -2.1 228,006 + ABIE51_RS01060 0.72 +0.4 228,006 + ABIE51_RS01060 0.72 -0.0 228,006 + ABIE51_RS01060 0.72 -1.4 228,007 - ABIE51_RS01060 0.72 -0.4 228,190 - ABIE51_RS01060 0.78 -0.3 228,331 - ABIE51_RS01060 0.82 +0.9 228,331 - ABIE51_RS01060 0.82 +3.1 228,414 + ABIE51_RS01060 0.85 -0.0 228,415 - ABIE51_RS01060 0.85 -1.0 228,489 + ABIE51_RS01060 0.87 +0.7 228,490 - ABIE51_RS01060 0.87 +1.5 228,605 + +0.2 228,810 + +1.2 228,811 - +0.2 228,811 - +1.8 229,481 - ABIE51_RS01065 0.65 -1.1 229,481 - ABIE51_RS01065 0.65 +0.1 229,504 + ABIE51_RS01065 0.68 -1.7 229,504 + ABIE51_RS01065 0.68 -0.3 229,504 + ABIE51_RS01065 0.68 -1.1 229,534 + ABIE51_RS01065 0.72 +1.5 229,552 + ABIE51_RS01065 0.75 +1.2 229,553 - ABIE51_RS01065 0.75 -0.5 229,709 - -1.0 229,714 + -1.3 229,714 + +0.2 229,715 - -0.8 229,715 - +0.8 229,715 - -0.3 229,803 + -0.4 229,803 + -0.4 230,028 + ABIE51_RS01070 0.20 -0.2 230,169 + ABIE51_RS01070 0.29 +0.1 230,169 + ABIE51_RS01070 0.29 +0.1 230,169 + ABIE51_RS01070 0.29 +0.8 230,170 - ABIE51_RS01070 0.29 -0.2 230,208 + ABIE51_RS01070 0.32 -0.1 230,209 - ABIE51_RS01070 0.32 -0.3 230,209 - ABIE51_RS01070 0.32 -0.6 230,316 + ABIE51_RS01070 0.39 +1.3 230,316 + ABIE51_RS01070 0.39 -0.3 230,317 - ABIE51_RS01070 0.39 -0.9 230,317 - ABIE51_RS01070 0.39 -0.2 230,438 + ABIE51_RS01070 0.47 -0.1
Or see this region's nucleotide sequence