Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00265 and ABIE51_RS00270 are separated by 197 nucleotides ABIE51_RS00270 and ABIE51_RS00275 are separated by 208 nucleotides ABIE51_RS00275 and ABIE51_RS00280 are separated by 173 nucleotides ABIE51_RS00280 and ABIE51_RS00285 are separated by 31 nucleotides
ABIE51_RS00265: ABIE51_RS00265 - 3-oxoacyl-ACP synthase III, at 54,255 to 55,277
_RS00265
ABIE51_RS00270: ABIE51_RS00270 - DUF4156 domain-containing protein, at 55,475 to 55,798
_RS00270
ABIE51_RS00275: ABIE51_RS00275 - pitrilysin family protein, at 56,007 to 58,862
_RS00275
ABIE51_RS00280: ABIE51_RS00280 - SDR family oxidoreductase, at 59,036 to 59,746
_RS00280
ABIE51_RS00285: ABIE51_RS00285 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 59,778 to 60,257
_RS00285
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.160 kb on - strand, within ABIE51_RS00265 at 55.160 kb on - strand, within ABIE51_RS00265 at 55.238 kb on + strand at 55.239 kb on - strand at 55.239 kb on - strand at 55.315 kb on + strand at 55.323 kb on - strand at 55.323 kb on - strand at 55.391 kb on + strand at 55.392 kb on - strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.423 kb on - strand at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.158 kb on - strand at 56.158 kb on - strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.225 kb on - strand at 56.225 kb on - strand at 56.353 kb on + strand, within ABIE51_RS00275 at 56.353 kb on + strand, within ABIE51_RS00275 at 56.353 kb on + strand, within ABIE51_RS00275 at 56.353 kb on + strand, within ABIE51_RS00275 at 56.354 kb on - strand, within ABIE51_RS00275 at 56.354 kb on - strand, within ABIE51_RS00275 at 56.354 kb on - strand, within ABIE51_RS00275 at 56.464 kb on + strand, within ABIE51_RS00275 at 56.464 kb on + strand, within ABIE51_RS00275 at 56.465 kb on - strand, within ABIE51_RS00275 at 56.465 kb on - strand, within ABIE51_RS00275 at 56.473 kb on + strand, within ABIE51_RS00275 at 56.474 kb on - strand, within ABIE51_RS00275 at 56.474 kb on - strand, within ABIE51_RS00275 at 56.474 kb on - strand, within ABIE51_RS00275 at 56.641 kb on + strand, within ABIE51_RS00275 at 56.641 kb on + strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.905 kb on + strand, within ABIE51_RS00275 at 56.905 kb on + strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 57.085 kb on + strand, within ABIE51_RS00275 at 57.086 kb on - strand, within ABIE51_RS00275 at 57.086 kb on - strand, within ABIE51_RS00275 at 57.215 kb on + strand, within ABIE51_RS00275 at 57.216 kb on - strand, within ABIE51_RS00275 at 57.262 kb on + strand, within ABIE51_RS00275 at 57.262 kb on + strand, within ABIE51_RS00275 at 57.262 kb on + strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.413 kb on + strand, within ABIE51_RS00275 at 57.413 kb on + strand, within ABIE51_RS00275 at 57.413 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.710 kb on + strand, within ABIE51_RS00275 at 57.856 kb on + strand, within ABIE51_RS00275 at 57.857 kb on - strand, within ABIE51_RS00275 at 57.857 kb on - strand, within ABIE51_RS00275 at 58.120 kb on + strand, within ABIE51_RS00275 at 58.195 kb on + strand, within ABIE51_RS00275 at 58.196 kb on - strand, within ABIE51_RS00275 at 58.277 kb on - strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.295 kb on - strand, within ABIE51_RS00275 at 58.295 kb on - strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.321 kb on - strand, within ABIE51_RS00275 at 58.331 kb on - strand, within ABIE51_RS00275 at 58.331 kb on - strand, within ABIE51_RS00275 at 58.483 kb on + strand, within ABIE51_RS00275 at 58.483 kb on + strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.552 kb on + strand, within ABIE51_RS00275 at 58.552 kb on + strand, within ABIE51_RS00275 at 58.652 kb on - strand at 58.652 kb on - strand at 58.652 kb on - strand at 58.757 kb on + strand at 58.893 kb on + strand at 58.893 kb on + strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.919 kb on + strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.942 kb on + strand at 59.002 kb on + strand at 59.002 kb on + strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.507 kb on + strand, within ABIE51_RS00280 at 59.508 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.721 kb on - strand at 59.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 55,159 + ABIE51_RS00265 0.88 +1.3 55,159 + ABIE51_RS00265 0.88 -1.3 55,159 + ABIE51_RS00265 0.88 +0.7 55,159 + ABIE51_RS00265 0.88 +1.8 55,159 + ABIE51_RS00265 0.88 -0.1 55,159 + ABIE51_RS00265 0.88 -0.5 55,159 + ABIE51_RS00265 0.88 -0.5 55,159 + ABIE51_RS00265 0.88 -3.4 55,159 + ABIE51_RS00265 0.88 -1.6 55,159 + ABIE51_RS00265 0.88 +0.5 55,159 + ABIE51_RS00265 0.88 -1.2 55,159 + ABIE51_RS00265 0.88 -2.1 55,160 - ABIE51_RS00265 0.88 -0.2 55,160 - ABIE51_RS00265 0.88 +0.3 55,238 + +0.8 55,239 - -0.2 55,239 - +2.4 55,315 + +1.4 55,323 - +0.0 55,323 - +0.4 55,391 + -0.1 55,392 - +1.0 55,422 + +2.3 55,422 + -1.0 55,422 + -0.5 55,422 + +0.4 55,422 + +0.1 55,423 - -0.5 55,621 - ABIE51_RS00270 0.45 -0.5 55,621 - ABIE51_RS00270 0.45 +0.3 55,621 - ABIE51_RS00270 0.45 -0.6 55,621 - ABIE51_RS00270 0.45 -1.0 55,621 - ABIE51_RS00270 0.45 -2.0 56,157 + -1.1 56,157 + -0.9 56,157 + -0.7 56,157 + +0.6 56,157 + +0.6 56,157 + -0.3 56,157 + -0.7 56,157 + -1.0 56,157 + +0.2 56,157 + +0.1 56,158 - -0.3 56,158 - -0.2 56,206 + +1.1 56,206 + -0.5 56,206 + -0.6 56,206 + -0.9 56,206 + -0.7 56,206 + -0.1 56,206 + +1.7 56,206 + -0.1 56,206 + +0.4 56,206 + +0.2 56,206 + -1.5 56,207 - -1.0 56,207 - +0.8 56,207 - -4.1 56,207 - +0.2 56,207 - -2.0 56,207 - +0.8 56,207 - +0.2 56,225 - -0.7 56,225 - -0.8 56,353 + ABIE51_RS00275 0.12 +1.0 56,353 + ABIE51_RS00275 0.12 +0.7 56,353 + ABIE51_RS00275 0.12 -0.8 56,353 + ABIE51_RS00275 0.12 +0.1 56,354 - ABIE51_RS00275 0.12 +0.9 56,354 - ABIE51_RS00275 0.12 +0.4 56,354 - ABIE51_RS00275 0.12 +0.8 56,464 + ABIE51_RS00275 0.16 -0.8 56,464 + ABIE51_RS00275 0.16 +0.2 56,465 - ABIE51_RS00275 0.16 -1.7 56,465 - ABIE51_RS00275 0.16 +3.1 56,473 + ABIE51_RS00275 0.16 -0.7 56,474 - ABIE51_RS00275 0.16 +0.3 56,474 - ABIE51_RS00275 0.16 -1.1 56,474 - ABIE51_RS00275 0.16 +0.2 56,641 + ABIE51_RS00275 0.22 -0.9 56,641 + ABIE51_RS00275 0.22 -0.1 56,642 - ABIE51_RS00275 0.22 -0.8 56,642 - ABIE51_RS00275 0.22 +1.0 56,642 - ABIE51_RS00275 0.22 +0.5 56,642 - ABIE51_RS00275 0.22 +0.1 56,642 - ABIE51_RS00275 0.22 -0.3 56,905 + ABIE51_RS00275 0.31 -0.7 56,905 + ABIE51_RS00275 0.31 -0.3 56,906 - ABIE51_RS00275 0.31 +0.4 56,906 - ABIE51_RS00275 0.31 -0.1 56,906 - ABIE51_RS00275 0.31 +1.2 56,906 - ABIE51_RS00275 0.31 -2.4 57,085 + ABIE51_RS00275 0.38 -0.7 57,086 - ABIE51_RS00275 0.38 -2.5 57,086 - ABIE51_RS00275 0.38 -0.2 57,215 + ABIE51_RS00275 0.42 +1.2 57,216 - ABIE51_RS00275 0.42 -0.7 57,262 + ABIE51_RS00275 0.44 -0.5 57,262 + ABIE51_RS00275 0.44 -0.0 57,262 + ABIE51_RS00275 0.44 -0.4 57,263 - ABIE51_RS00275 0.44 +1.9 57,263 - ABIE51_RS00275 0.44 -0.8 57,263 - ABIE51_RS00275 0.44 -0.4 57,263 - ABIE51_RS00275 0.44 +0.5 57,263 - ABIE51_RS00275 0.44 +0.4 57,413 + ABIE51_RS00275 0.49 +0.3 57,413 + ABIE51_RS00275 0.49 +0.3 57,413 + ABIE51_RS00275 0.49 +0.2 57,622 + ABIE51_RS00275 0.57 -0.1 57,622 + ABIE51_RS00275 0.57 +0.8 57,622 + ABIE51_RS00275 0.57 +1.3 57,622 + ABIE51_RS00275 0.57 +2.1 57,622 + ABIE51_RS00275 0.57 +0.9 57,710 + ABIE51_RS00275 0.60 -2.3 57,856 + ABIE51_RS00275 0.65 -0.0 57,857 - ABIE51_RS00275 0.65 +0.1 57,857 - ABIE51_RS00275 0.65 -1.0 58,120 + ABIE51_RS00275 0.74 +0.3 58,195 + ABIE51_RS00275 0.77 +0.3 58,196 - ABIE51_RS00275 0.77 -0.3 58,277 - ABIE51_RS00275 0.79 +0.0 58,294 + ABIE51_RS00275 0.80 -0.8 58,294 + ABIE51_RS00275 0.80 +0.7 58,294 + ABIE51_RS00275 0.80 -2.5 58,294 + ABIE51_RS00275 0.80 -1.5 58,295 - ABIE51_RS00275 0.80 -0.1 58,295 - ABIE51_RS00275 0.80 -1.3 58,320 + ABIE51_RS00275 0.81 +0.3 58,320 + ABIE51_RS00275 0.81 +0.4 58,320 + ABIE51_RS00275 0.81 -0.3 58,321 - ABIE51_RS00275 0.81 +0.8 58,331 - ABIE51_RS00275 0.81 -0.6 58,331 - ABIE51_RS00275 0.81 -0.1 58,483 + ABIE51_RS00275 0.87 -0.7 58,483 + ABIE51_RS00275 0.87 +1.1 58,484 - ABIE51_RS00275 0.87 -0.8 58,484 - ABIE51_RS00275 0.87 -0.1 58,484 - ABIE51_RS00275 0.87 +0.1 58,552 + ABIE51_RS00275 0.89 -0.2 58,552 + ABIE51_RS00275 0.89 -1.5 58,652 - +0.0 58,652 - -0.5 58,652 - +0.0 58,757 + -0.1 58,893 + +0.0 58,893 + +1.1 58,894 - -0.1 58,894 - +0.5 58,894 - +1.3 58,894 - +0.4 58,894 - +0.3 58,919 + +0.1 58,920 - +2.4 58,920 - -0.4 58,920 - -0.1 58,942 + -0.6 59,002 + -0.0 59,002 + -0.2 59,003 - -0.2 59,003 - -0.5 59,003 - +0.0 59,003 - -0.2 59,214 + ABIE51_RS00280 0.25 -0.3 59,214 + ABIE51_RS00280 0.25 +0.2 59,214 + ABIE51_RS00280 0.25 -0.3 59,214 + ABIE51_RS00280 0.25 +1.5 59,214 + ABIE51_RS00280 0.25 -1.1 59,214 + ABIE51_RS00280 0.25 +0.1 59,215 - ABIE51_RS00280 0.25 -0.1 59,215 - ABIE51_RS00280 0.25 +2.0 59,215 - ABIE51_RS00280 0.25 -1.4 59,215 - ABIE51_RS00280 0.25 -0.2 59,215 - ABIE51_RS00280 0.25 +0.1 59,507 + ABIE51_RS00280 0.66 +0.3 59,508 - ABIE51_RS00280 0.66 -0.5 59,641 - ABIE51_RS00280 0.85 -0.2 59,641 - ABIE51_RS00280 0.85 -2.2 59,721 - -0.4 59,806 - +0.8
Or see this region's nucleotide sequence