Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00250 and ABIE51_RS00255 are separated by 114 nucleotides ABIE51_RS00255 and ABIE51_RS00260 are separated by 108 nucleotides ABIE51_RS00260 and ABIE51_RS00265 are separated by 198 nucleotides
ABIE51_RS00250: ABIE51_RS00250 - olefin beta-lactone synthetase, at 50,897 to 52,550
_RS00250
ABIE51_RS00255: ABIE51_RS00255 - YkgJ family cysteine cluster protein, at 52,665 to 53,048
_RS00255
ABIE51_RS00260: ABIE51_RS00260 - alpha/beta fold hydrolase, at 53,157 to 54,056
_RS00260
ABIE51_RS00265: ABIE51_RS00265 - 3-oxoacyl-ACP synthase III, at 54,255 to 55,277
_RS00265
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 52.420 kb on + strand at 52.421 kb on - strand at 52.863 kb on + strand, within ABIE51_RS00255 at 52.864 kb on - strand, within ABIE51_RS00255 at 53.158 kb on + strand at 53.158 kb on + strand at 53.159 kb on - strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.227 kb on + strand at 53.228 kb on - strand at 53.228 kb on - strand at 53.228 kb on - strand at 53.228 kb on - strand at 53.354 kb on - strand, within ABIE51_RS00260 at 53.468 kb on - strand, within ABIE51_RS00260 at 53.479 kb on + strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.480 kb on - strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.524 kb on + strand, within ABIE51_RS00260 at 53.525 kb on - strand, within ABIE51_RS00260 at 53.525 kb on - strand, within ABIE51_RS00260 at 53.803 kb on + strand, within ABIE51_RS00260 at 53.804 kb on - strand, within ABIE51_RS00260 at 53.873 kb on - strand, within ABIE51_RS00260 at 53.908 kb on + strand, within ABIE51_RS00260 at 53.908 kb on + strand, within ABIE51_RS00260 at 53.908 kb on + strand, within ABIE51_RS00260 at 53.908 kb on + strand, within ABIE51_RS00260 at 53.909 kb on - strand, within ABIE51_RS00260 at 53.909 kb on - strand, within ABIE51_RS00260 at 53.909 kb on - strand, within ABIE51_RS00260 at 53.977 kb on + strand at 53.977 kb on + strand at 53.977 kb on + strand at 53.977 kb on + strand at 53.977 kb on + strand at 53.977 kb on + strand at 53.977 kb on + strand at 53.978 kb on - strand at 53.978 kb on - strand at 53.978 kb on - strand at 53.978 kb on - strand at 54.029 kb on - strand at 54.110 kb on + strand at 54.110 kb on + strand at 54.111 kb on - strand at 54.257 kb on - strand at 54.257 kb on - strand at 54.257 kb on - strand at 54.284 kb on + strand at 54.284 kb on + strand at 54.284 kb on + strand at 54.284 kb on + strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.808 kb on + strand, within ABIE51_RS00265 at 54.808 kb on + strand, within ABIE51_RS00265 at 54.808 kb on + strand, within ABIE51_RS00265 at 54.808 kb on + strand, within ABIE51_RS00265 at 54.809 kb on - strand, within ABIE51_RS00265 at 54.809 kb on - strand, within ABIE51_RS00265 at 54.847 kb on + strand, within ABIE51_RS00265 at 54.848 kb on - strand, within ABIE51_RS00265 at 54.848 kb on - strand, within ABIE51_RS00265 at 54.848 kb on - strand, within ABIE51_RS00265 at 54.995 kb on - strand, within ABIE51_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 52,420 + +1.6 52,421 - +0.1 52,863 + ABIE51_RS00255 0.52 +0.8 52,864 - ABIE51_RS00255 0.52 +0.4 53,158 + +2.8 53,158 + +0.7 53,159 - +0.6 53,227 + +0.4 53,227 + +0.7 53,227 + -0.4 53,227 + +1.9 53,227 + -0.2 53,227 + +0.5 53,228 - +0.3 53,228 - +0.1 53,228 - -1.7 53,228 - +0.0 53,354 - ABIE51_RS00260 0.22 +0.6 53,468 - ABIE51_RS00260 0.35 -0.1 53,479 + ABIE51_RS00260 0.36 -0.3 53,480 - ABIE51_RS00260 0.36 -0.1 53,480 - ABIE51_RS00260 0.36 -1.2 53,480 - ABIE51_RS00260 0.36 +0.3 53,480 - ABIE51_RS00260 0.36 +1.3 53,480 - ABIE51_RS00260 0.36 -0.2 53,480 - ABIE51_RS00260 0.36 +0.6 53,480 - ABIE51_RS00260 0.36 -0.5 53,524 + ABIE51_RS00260 0.41 +0.8 53,524 + ABIE51_RS00260 0.41 -1.6 53,524 + ABIE51_RS00260 0.41 +0.3 53,524 + ABIE51_RS00260 0.41 -0.1 53,525 - ABIE51_RS00260 0.41 -1.5 53,525 - ABIE51_RS00260 0.41 +0.2 53,803 + ABIE51_RS00260 0.72 +0.2 53,804 - ABIE51_RS00260 0.72 +0.8 53,873 - ABIE51_RS00260 0.80 +0.9 53,908 + ABIE51_RS00260 0.83 -2.1 53,908 + ABIE51_RS00260 0.83 -0.3 53,908 + ABIE51_RS00260 0.83 +2.1 53,908 + ABIE51_RS00260 0.83 -0.3 53,909 - ABIE51_RS00260 0.84 +0.2 53,909 - ABIE51_RS00260 0.84 -0.1 53,909 - ABIE51_RS00260 0.84 -1.1 53,977 + -0.6 53,977 + -2.1 53,977 + -0.9 53,977 + +3.1 53,977 + +0.1 53,977 + -0.0 53,977 + -2.1 53,978 - -0.3 53,978 - -0.0 53,978 - -0.1 53,978 - -1.9 54,029 - +0.0 54,110 + +0.2 54,110 + -2.0 54,111 - +0.1 54,257 - -0.3 54,257 - -1.0 54,257 - -1.2 54,284 + -0.7 54,284 + +1.1 54,284 + +0.4 54,284 + +0.1 54,285 - -0.2 54,285 - +0.7 54,285 - +0.1 54,808 + ABIE51_RS00265 0.54 +1.6 54,808 + ABIE51_RS00265 0.54 -0.7 54,808 + ABIE51_RS00265 0.54 -0.3 54,808 + ABIE51_RS00265 0.54 -1.0 54,809 - ABIE51_RS00265 0.54 -0.9 54,809 - ABIE51_RS00265 0.54 -0.7 54,847 + ABIE51_RS00265 0.58 -0.8 54,848 - ABIE51_RS00265 0.58 -1.4 54,848 - ABIE51_RS00265 0.58 +0.3 54,848 - ABIE51_RS00265 0.58 +1.2 54,995 - ABIE51_RS00265 0.72 +1.8
Or see this region's nucleotide sequence