Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20424 and SM_b20425 are separated by 163 nucleotides SM_b20425 and SM_b20426 are separated by 209 nucleotides SM_b20426 and SM_b20427 are separated by 170 nucleotides
SM_b20424: SM_b20424 - succinate-semialdehyde dehydrogenase, at 438,630 to 440,126
_b20424
SM_b20425: SM_b20425 - transcriptional regulator, at 440,290 to 440,784
_b20425
SM_b20426: SM_b20426 - transcriptional regulator, at 440,994 to 442,274
_b20426
SM_b20427: SM_b20427 - amino acid ABC transporter ATP-binding protein, at 442,445 to 443,230
_b20427
Position (kb) 440
441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.009 kb on + strand at 440.044 kb on + strand at 440.045 kb on - strand at 440.126 kb on + strand at 440.127 kb on - strand at 440.245 kb on + strand at 440.246 kb on - strand at 440.275 kb on + strand at 440.276 kb on - strand at 440.291 kb on + strand at 440.372 kb on + strand, within SM_b20425 at 440.373 kb on - strand, within SM_b20425 at 440.373 kb on - strand, within SM_b20425 at 440.381 kb on + strand, within SM_b20425 at 440.466 kb on + strand, within SM_b20425 at 440.466 kb on + strand, within SM_b20425 at 440.467 kb on - strand, within SM_b20425 at 440.467 kb on - strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.468 kb on + strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.469 kb on - strand, within SM_b20425 at 440.728 kb on - strand, within SM_b20425 at 440.785 kb on + strand at 440.785 kb on + strand at 440.804 kb on + strand at 441.088 kb on + strand at 441.088 kb on + strand at 441.088 kb on + strand at 441.154 kb on - strand, within SM_b20426 at 441.154 kb on - strand, within SM_b20426 at 441.205 kb on + strand, within SM_b20426 at 441.205 kb on + strand, within SM_b20426 at 441.216 kb on + strand, within SM_b20426 at 441.216 kb on + strand, within SM_b20426 at 441.216 kb on + strand, within SM_b20426 at 441.217 kb on - strand, within SM_b20426 at 441.371 kb on - strand, within SM_b20426 at 441.473 kb on + strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.474 kb on - strand, within SM_b20426 at 441.495 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.771 kb on + strand, within SM_b20426 at 441.819 kb on + strand, within SM_b20426 at 442.653 kb on - strand, within SM_b20427 at 442.759 kb on + strand, within SM_b20427 at 442.760 kb on - strand, within SM_b20427 at 443.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 440,009 + -0.4 440,044 + -0.0 440,045 - +0.0 440,126 + +2.5 440,127 - +0.1 440,245 + -0.0 440,246 - -0.4 440,275 + -1.2 440,276 - -0.1 440,291 + +1.0 440,372 + SM_b20425 0.17 -0.4 440,373 - SM_b20425 0.17 -0.1 440,373 - SM_b20425 0.17 -0.8 440,381 + SM_b20425 0.18 -0.4 440,466 + SM_b20425 0.36 +0.3 440,466 + SM_b20425 0.36 +0.0 440,467 - SM_b20425 0.36 +0.3 440,467 - SM_b20425 0.36 -0.5 440,468 + SM_b20425 0.36 +1.1 440,468 + SM_b20425 0.36 +0.4 440,468 + SM_b20425 0.36 +0.2 440,468 + SM_b20425 0.36 -0.6 440,469 - SM_b20425 0.36 -0.1 440,469 - SM_b20425 0.36 -0.0 440,469 - SM_b20425 0.36 -0.0 440,728 - SM_b20425 0.88 +0.0 440,785 + -0.7 440,785 + +0.6 440,804 + +1.1 441,088 + +1.1 441,088 + +0.8 441,088 + -3.2 441,154 - SM_b20426 0.12 +0.3 441,154 - SM_b20426 0.12 -0.3 441,205 + SM_b20426 0.16 -0.6 441,205 + SM_b20426 0.16 +0.2 441,216 + SM_b20426 0.17 -0.9 441,216 + SM_b20426 0.17 -1.9 441,216 + SM_b20426 0.17 -1.0 441,217 - SM_b20426 0.17 +0.3 441,371 - SM_b20426 0.29 -0.2 441,473 + SM_b20426 0.37 +1.1 441,474 - SM_b20426 0.37 -0.8 441,474 - SM_b20426 0.37 -1.4 441,474 - SM_b20426 0.37 -0.5 441,495 + SM_b20426 0.39 -0.3 441,771 + SM_b20426 0.61 -0.8 441,771 + SM_b20426 0.61 -0.6 441,771 + SM_b20426 0.61 -0.3 441,819 + SM_b20426 0.64 -1.1 442,653 - SM_b20427 0.26 +0.7 442,759 + SM_b20427 0.40 -2.0 442,760 - SM_b20427 0.40 -0.6 443,228 + +0.4
Or see this region's nucleotide sequence