Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5054 and Psyr_5055 are separated by 119 nucleotides Psyr_5055 and Psyr_5056 are separated by 54 nucleotides
Psyr_5054: Psyr_5054 - Protein of unknown function UPF0187, at 5,996,327 to 5,997,214
_5054
Psyr_5055: Psyr_5055 - YeeE/YedE, at 5,997,334 to 5,998,545
_5055
Psyr_5056: Psyr_5056 - transcriptional regulator, GntR family, at 5,998,600 to 6,000,162
_5056
Position (kb) 5997
5998
5999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.590 kb on - strand, within Psyr_5054 at 5996.590 kb on - strand, within Psyr_5054 at 5996.596 kb on - strand, within Psyr_5054 at 5996.608 kb on + strand, within Psyr_5054 at 5996.608 kb on + strand, within Psyr_5054 at 5996.609 kb on - strand, within Psyr_5054 at 5996.617 kb on + strand, within Psyr_5054 at 5996.618 kb on - strand, within Psyr_5054 at 5996.734 kb on + strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.859 kb on + strand, within Psyr_5054 at 5996.859 kb on + strand, within Psyr_5054 at 5996.859 kb on + strand, within Psyr_5054 at 5996.860 kb on - strand, within Psyr_5054 at 5996.860 kb on - strand, within Psyr_5054 at 5997.003 kb on + strand, within Psyr_5054 at 5997.003 kb on + strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.096 kb on + strand, within Psyr_5054 at 5997.096 kb on + strand, within Psyr_5054 at 5997.097 kb on - strand, within Psyr_5054 at 5997.097 kb on - strand, within Psyr_5054 at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.163 kb on - strand at 5997.163 kb on - strand at 5997.236 kb on + strand at 5997.249 kb on + strand at 5997.249 kb on + strand at 5997.260 kb on - strand at 5997.312 kb on + strand at 5997.417 kb on - strand at 5997.473 kb on + strand, within Psyr_5055 at 5997.473 kb on + strand, within Psyr_5055 at 5997.474 kb on - strand, within Psyr_5055 at 5997.809 kb on + strand, within Psyr_5055 at 5997.809 kb on + strand, within Psyr_5055 at 5998.388 kb on + strand, within Psyr_5055 at 5998.388 kb on + strand, within Psyr_5055 at 5998.389 kb on - strand, within Psyr_5055 at 5998.389 kb on - strand, within Psyr_5055 at 5998.389 kb on - strand, within Psyr_5055 at 5998.531 kb on - strand at 5998.550 kb on - strand at 5998.564 kb on + strand at 5998.564 kb on + strand at 5998.571 kb on - strand at 5998.581 kb on + strand at 5998.582 kb on - strand at 5998.582 kb on - strand at 5998.583 kb on + strand at 5998.583 kb on + strand at 5998.583 kb on + strand at 5998.583 kb on + strand at 5998.584 kb on - strand at 5998.584 kb on - strand at 5998.584 kb on - strand at 5998.584 kb on - strand at 5998.584 kb on - strand at 5998.676 kb on - strand at 5998.725 kb on - strand at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.924 kb on + strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.925 kb on - strand, within Psyr_5056 at 5998.982 kb on - strand, within Psyr_5056 at 5999.054 kb on + strand, within Psyr_5056 at 5999.054 kb on + strand, within Psyr_5056 at 5999.102 kb on + strand, within Psyr_5056 at 5999.102 kb on + strand, within Psyr_5056 at 5999.102 kb on + strand, within Psyr_5056 at 5999.102 kb on + strand, within Psyr_5056 at 5999.177 kb on + strand, within Psyr_5056 at 5999.178 kb on - strand, within Psyr_5056 at 5999.288 kb on + strand, within Psyr_5056 at 5999.288 kb on + strand, within Psyr_5056 at 5999.289 kb on - strand, within Psyr_5056 at 5999.289 kb on - strand, within Psyr_5056 at 5999.289 kb on - strand, within Psyr_5056 at 5999.537 kb on + strand, within Psyr_5056 at 5999.538 kb on - strand, within Psyr_5056 at 5999.538 kb on - strand, within Psyr_5056
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,996,589 + Psyr_5054 0.30 -0.2 5,996,589 + Psyr_5054 0.30 -1.4 5,996,589 + Psyr_5054 0.30 -1.0 5,996,589 + Psyr_5054 0.30 -0.2 5,996,589 + Psyr_5054 0.30 +0.1 5,996,590 - Psyr_5054 0.30 -0.5 5,996,590 - Psyr_5054 0.30 +0.4 5,996,596 - Psyr_5054 0.30 -1.4 5,996,608 + Psyr_5054 0.32 -0.5 5,996,608 + Psyr_5054 0.32 -0.9 5,996,609 - Psyr_5054 0.32 +0.0 5,996,617 + Psyr_5054 0.33 -0.2 5,996,618 - Psyr_5054 0.33 +0.1 5,996,734 + Psyr_5054 0.46 +0.6 5,996,735 - Psyr_5054 0.46 +0.5 5,996,735 - Psyr_5054 0.46 +0.6 5,996,735 - Psyr_5054 0.46 -2.3 5,996,735 - Psyr_5054 0.46 -0.4 5,996,735 - Psyr_5054 0.46 -0.5 5,996,859 + Psyr_5054 0.60 -0.1 5,996,859 + Psyr_5054 0.60 +0.2 5,996,859 + Psyr_5054 0.60 -0.8 5,996,860 - Psyr_5054 0.60 -0.4 5,996,860 - Psyr_5054 0.60 +0.8 5,997,003 + Psyr_5054 0.76 +0.3 5,997,003 + Psyr_5054 0.76 -1.7 5,997,004 - Psyr_5054 0.76 +0.1 5,997,004 - Psyr_5054 0.76 -0.1 5,997,004 - Psyr_5054 0.76 -0.3 5,997,004 - Psyr_5054 0.76 +1.2 5,997,096 + Psyr_5054 0.87 +1.0 5,997,096 + Psyr_5054 0.87 +0.6 5,997,097 - Psyr_5054 0.87 +0.5 5,997,097 - Psyr_5054 0.87 +0.8 5,997,158 + -0.6 5,997,158 + +0.0 5,997,158 + +0.0 5,997,158 + +0.0 5,997,158 + +0.0 5,997,158 + +0.0 5,997,158 + -1.7 5,997,158 + +1.0 5,997,158 + -2.4 5,997,158 + -0.6 5,997,158 + -1.5 5,997,158 + +0.0 5,997,159 - -1.5 5,997,159 - -0.5 5,997,159 - +0.6 5,997,159 - +0.6 5,997,159 - -0.1 5,997,159 - +0.1 5,997,159 - -0.3 5,997,159 - -0.9 5,997,159 - +1.0 5,997,159 - +1.8 5,997,159 - -1.0 5,997,159 - +0.6 5,997,159 - -0.2 5,997,159 - +1.3 5,997,159 - +1.0 5,997,159 - -0.8 5,997,159 - -0.3 5,997,163 - -1.1 5,997,163 - +0.6 5,997,236 + -0.5 5,997,249 + -1.0 5,997,249 + -0.7 5,997,260 - +0.3 5,997,312 + -0.3 5,997,417 - -0.1 5,997,473 + Psyr_5055 0.11 -0.3 5,997,473 + Psyr_5055 0.11 -0.8 5,997,474 - Psyr_5055 0.12 +0.9 5,997,809 + Psyr_5055 0.39 -1.5 5,997,809 + Psyr_5055 0.39 -0.1 5,998,388 + Psyr_5055 0.87 -1.2 5,998,388 + Psyr_5055 0.87 -0.3 5,998,389 - Psyr_5055 0.87 -0.1 5,998,389 - Psyr_5055 0.87 +0.6 5,998,389 - Psyr_5055 0.87 +0.2 5,998,531 - -0.1 5,998,550 - +0.0 5,998,564 + +0.6 5,998,564 + -0.2 5,998,571 - +2.0 5,998,581 + -0.1 5,998,582 - -1.9 5,998,582 - +0.1 5,998,583 + -0.1 5,998,583 + -1.7 5,998,583 + -0.5 5,998,583 + +0.6 5,998,584 - +0.5 5,998,584 - +0.3 5,998,584 - +0.5 5,998,584 - -1.3 5,998,584 - +0.0 5,998,676 - -1.2 5,998,725 - -1.0 5,998,924 + Psyr_5056 0.21 -0.4 5,998,924 + Psyr_5056 0.21 +0.2 5,998,924 + Psyr_5056 0.21 +1.0 5,998,924 + Psyr_5056 0.21 +0.2 5,998,924 + Psyr_5056 0.21 -0.3 5,998,924 + Psyr_5056 0.21 +0.9 5,998,924 + Psyr_5056 0.21 +1.5 5,998,924 + Psyr_5056 0.21 +0.5 5,998,924 + Psyr_5056 0.21 +0.3 5,998,924 + Psyr_5056 0.21 -1.0 5,998,924 + Psyr_5056 0.21 +0.7 5,998,924 + Psyr_5056 0.21 +1.7 5,998,924 + Psyr_5056 0.21 +0.2 5,998,924 + Psyr_5056 0.21 -2.0 5,998,924 + Psyr_5056 0.21 -0.3 5,998,924 + Psyr_5056 0.21 +0.4 5,998,924 + Psyr_5056 0.21 -0.9 5,998,924 + Psyr_5056 0.21 +0.8 5,998,924 + Psyr_5056 0.21 -0.3 5,998,924 + Psyr_5056 0.21 -0.7 5,998,924 + Psyr_5056 0.21 -0.3 5,998,924 + Psyr_5056 0.21 -0.0 5,998,924 + Psyr_5056 0.21 +0.0 5,998,924 + Psyr_5056 0.21 +0.6 5,998,925 - Psyr_5056 0.21 -0.2 5,998,925 - Psyr_5056 0.21 -1.2 5,998,925 - Psyr_5056 0.21 -0.1 5,998,925 - Psyr_5056 0.21 +0.3 5,998,925 - Psyr_5056 0.21 -0.5 5,998,925 - Psyr_5056 0.21 +0.9 5,998,925 - Psyr_5056 0.21 -0.8 5,998,925 - Psyr_5056 0.21 -0.0 5,998,925 - Psyr_5056 0.21 +0.1 5,998,925 - Psyr_5056 0.21 -0.8 5,998,925 - Psyr_5056 0.21 +1.6 5,998,925 - Psyr_5056 0.21 -1.3 5,998,925 - Psyr_5056 0.21 +0.2 5,998,925 - Psyr_5056 0.21 +0.7 5,998,982 - Psyr_5056 0.24 -0.7 5,999,054 + Psyr_5056 0.29 -0.2 5,999,054 + Psyr_5056 0.29 -1.3 5,999,102 + Psyr_5056 0.32 +1.0 5,999,102 + Psyr_5056 0.32 +1.3 5,999,102 + Psyr_5056 0.32 -0.4 5,999,102 + Psyr_5056 0.32 +0.8 5,999,177 + Psyr_5056 0.37 -0.2 5,999,178 - Psyr_5056 0.37 -0.1 5,999,288 + Psyr_5056 0.44 +1.5 5,999,288 + Psyr_5056 0.44 +0.0 5,999,289 - Psyr_5056 0.44 -0.2 5,999,289 - Psyr_5056 0.44 +1.3 5,999,289 - Psyr_5056 0.44 +0.7 5,999,537 + Psyr_5056 0.60 -0.1 5,999,538 - Psyr_5056 0.60 -0.0 5,999,538 - Psyr_5056 0.60 +0.5
Or see this region's nucleotide sequence