Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4603 and Psyr_4604 are separated by 154 nucleotides Psyr_4604 and Psyr_4605 are separated by 97 nucleotides Psyr_4605 and Psyr_4606 are separated by 105 nucleotides
Psyr_4603: Psyr_4603 - phage repressor protein, Serine peptidase, MEROPS family S24, at 5,460,691 to 5,461,380
_4603
Psyr_4604: Psyr_4604 - hypothetical protein, at 5,461,535 to 5,461,783
_4604
Psyr_4605: Psyr_4605 - transcriptional regulator PrtN, putative, at 5,461,881 to 5,462,147
_4605
Psyr_4606: Psyr_4606 - Outer membrane autotransporter barrel, at 5,462,253 to 5,464,175
_4606
Position (kb) 5461
5462
5463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5461.473 kb on + strand at 5461.473 kb on + strand at 5461.473 kb on + strand at 5461.473 kb on + strand at 5461.474 kb on - strand at 5461.474 kb on - strand at 5461.474 kb on - strand at 5461.474 kb on - strand at 5461.574 kb on + strand, within Psyr_4604 at 5461.574 kb on + strand, within Psyr_4604 at 5461.574 kb on + strand, within Psyr_4604 at 5461.575 kb on - strand, within Psyr_4604 at 5461.575 kb on - strand, within Psyr_4604 at 5461.606 kb on + strand, within Psyr_4604 at 5461.606 kb on + strand, within Psyr_4604 at 5461.607 kb on - strand, within Psyr_4604 at 5461.767 kb on - strand at 5461.840 kb on + strand at 5461.846 kb on - strand at 5461.916 kb on - strand, within Psyr_4605 at 5461.916 kb on - strand, within Psyr_4605 at 5461.916 kb on - strand, within Psyr_4605 at 5462.092 kb on - strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.214 kb on - strand at 5462.214 kb on - strand at 5462.408 kb on + strand at 5462.408 kb on + strand at 5462.577 kb on - strand, within Psyr_4606 at 5462.686 kb on - strand, within Psyr_4606 at 5462.686 kb on - strand, within Psyr_4606 at 5462.727 kb on + strand, within Psyr_4606 at 5462.728 kb on - strand, within Psyr_4606 at 5462.728 kb on - strand, within Psyr_4606 at 5462.728 kb on - strand, within Psyr_4606 at 5462.730 kb on + strand, within Psyr_4606 at 5462.850 kb on + strand, within Psyr_4606 at 5462.850 kb on + strand, within Psyr_4606 at 5462.851 kb on - strand, within Psyr_4606 at 5462.882 kb on + strand, within Psyr_4606 at 5462.883 kb on - strand, within Psyr_4606 at 5462.957 kb on - strand, within Psyr_4606 at 5462.957 kb on - strand, within Psyr_4606 at 5462.957 kb on - strand, within Psyr_4606 at 5463.095 kb on + strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,461,473 + -0.8 5,461,473 + -0.8 5,461,473 + -0.5 5,461,473 + +1.3 5,461,474 - -0.4 5,461,474 - +0.5 5,461,474 - +0.4 5,461,474 - +0.3 5,461,574 + Psyr_4604 0.16 -0.6 5,461,574 + Psyr_4604 0.16 +0.7 5,461,574 + Psyr_4604 0.16 -0.6 5,461,575 - Psyr_4604 0.16 -0.3 5,461,575 - Psyr_4604 0.16 -0.3 5,461,606 + Psyr_4604 0.29 +1.0 5,461,606 + Psyr_4604 0.29 -1.8 5,461,607 - Psyr_4604 0.29 -0.1 5,461,767 - +0.4 5,461,840 + -0.8 5,461,846 - -0.3 5,461,916 - Psyr_4605 0.13 +0.9 5,461,916 - Psyr_4605 0.13 +0.1 5,461,916 - Psyr_4605 0.13 +0.4 5,462,092 - Psyr_4605 0.79 +0.8 5,462,112 + Psyr_4605 0.87 +0.7 5,462,112 + Psyr_4605 0.87 +1.4 5,462,112 + Psyr_4605 0.87 -0.1 5,462,112 + Psyr_4605 0.87 +1.9 5,462,112 + Psyr_4605 0.87 +0.2 5,462,113 - Psyr_4605 0.87 +0.9 5,462,113 - Psyr_4605 0.87 -1.1 5,462,113 - Psyr_4605 0.87 +1.0 5,462,113 - Psyr_4605 0.87 +0.3 5,462,213 + +0.5 5,462,213 + +0.7 5,462,213 + +0.7 5,462,213 + +0.9 5,462,214 - +1.2 5,462,214 - -0.7 5,462,408 + -0.7 5,462,408 + +0.3 5,462,577 - Psyr_4606 0.17 -0.1 5,462,686 - Psyr_4606 0.23 +0.9 5,462,686 - Psyr_4606 0.23 -1.1 5,462,727 + Psyr_4606 0.25 +0.2 5,462,728 - Psyr_4606 0.25 -1.1 5,462,728 - Psyr_4606 0.25 +0.7 5,462,728 - Psyr_4606 0.25 +0.7 5,462,730 + Psyr_4606 0.25 +0.1 5,462,850 + Psyr_4606 0.31 -0.3 5,462,850 + Psyr_4606 0.31 -0.4 5,462,851 - Psyr_4606 0.31 +0.6 5,462,882 + Psyr_4606 0.33 +0.9 5,462,883 - Psyr_4606 0.33 -1.2 5,462,957 - Psyr_4606 0.37 +1.8 5,462,957 - Psyr_4606 0.37 +1.4 5,462,957 - Psyr_4606 0.37 -0.8 5,463,095 + Psyr_4606 0.44 +0.3 5,463,096 - Psyr_4606 0.44 +1.7 5,463,096 - Psyr_4606 0.44 +1.1 5,463,096 - Psyr_4606 0.44 +0.1 5,463,096 - Psyr_4606 0.44 +0.7
Or see this region's nucleotide sequence