Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4433 and Psyr_4434 are separated by 10 nucleotides Psyr_4434 and Psyr_4435 overlap by 4 nucleotides Psyr_4435 and Psyr_4436 are separated by 140 nucleotides Psyr_4436 and Psyr_4437 are separated by 51 nucleotides Psyr_4437 and Psyr_4438 are separated by 13 nucleotides
Psyr_4433: Psyr_4433 - GCN5-related N-acetyltransferase, at 5,300,980 to 5,301,537
_4433
Psyr_4434: Psyr_4434 - GCN5-related N-acetyltransferase, at 5,301,548 to 5,302,081
_4434
Psyr_4435: Psyr_4435 - Urease, beta subunit, at 5,302,078 to 5,302,383
_4435
Psyr_4436: Psyr_4436 - urease, Metallo peptidase, MEROPS family M38, at 5,302,524 to 5,304,224
_4436
Psyr_4437: Psyr_4437 - hypothetical protein, at 5,304,276 to 5,304,884
_4437
Psyr_4438: Psyr_4438 - hypothetical protein, at 5,304,898 to 5,305,329
_4438
Position (kb) 5302
5303
5304
5305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5301.535 kb on + strand at 5301.686 kb on + strand, within Psyr_4434 at 5301.686 kb on + strand, within Psyr_4434 at 5301.687 kb on - strand, within Psyr_4434 at 5301.687 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.969 kb on - strand, within Psyr_4434 at 5301.983 kb on + strand, within Psyr_4434 at 5301.984 kb on - strand, within Psyr_4434 at 5301.984 kb on - strand, within Psyr_4434 at 5302.011 kb on - strand, within Psyr_4434 at 5302.053 kb on - strand at 5302.053 kb on - strand at 5302.381 kb on + strand at 5302.381 kb on + strand at 5302.381 kb on + strand at 5302.382 kb on - strand at 5302.382 kb on - strand at 5302.428 kb on + strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.429 kb on - strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.476 kb on + strand at 5302.477 kb on - strand at 5302.477 kb on - strand at 5302.477 kb on - strand at 5302.516 kb on + strand at 5302.531 kb on + strand at 5302.532 kb on - strand at 5302.532 kb on - strand at 5302.532 kb on - strand at 5302.545 kb on + strand at 5302.546 kb on - strand at 5302.635 kb on + strand at 5302.636 kb on - strand at 5302.636 kb on - strand at 5302.636 kb on - strand at 5302.797 kb on - strand, within Psyr_4436 at 5303.236 kb on - strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.331 kb on + strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.332 kb on - strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.727 kb on + strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.728 kb on - strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.739 kb on + strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.740 kb on - strand, within Psyr_4436 at 5303.802 kb on - strand, within Psyr_4436 at 5303.802 kb on - strand, within Psyr_4436 at 5304.109 kb on - strand at 5304.109 kb on - strand at 5304.109 kb on - strand at 5304.141 kb on + strand at 5304.141 kb on + strand at 5304.142 kb on - strand at 5304.169 kb on + strand at 5304.170 kb on - strand at 5304.210 kb on + strand at 5304.261 kb on + strand at 5304.261 kb on + strand at 5304.262 kb on - strand at 5304.265 kb on + strand at 5304.265 kb on + strand at 5304.266 kb on - strand at 5304.266 kb on - strand at 5304.277 kb on + strand at 5304.389 kb on + strand, within Psyr_4437 at 5304.403 kb on + strand, within Psyr_4437 at 5304.403 kb on + strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.404 kb on - strand, within Psyr_4437 at 5304.478 kb on - strand, within Psyr_4437 at 5304.478 kb on - strand, within Psyr_4437 at 5304.506 kb on + strand, within Psyr_4437 at 5304.506 kb on + strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand, within Psyr_4437 at 5304.507 kb on - strand at 5304.844 kb on - strand at 5304.900 kb on - strand at 5305.018 kb on + strand, within Psyr_4438 at 5305.018 kb on + strand, within Psyr_4438 at 5305.018 kb on + strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.019 kb on - strand, within Psyr_4438 at 5305.026 kb on - strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.112 kb on + strand, within Psyr_4438 at 5305.113 kb on - strand, within Psyr_4438 at 5305.113 kb on - strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.180 kb on + strand, within Psyr_4438 at 5305.181 kb on - strand, within Psyr_4438
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,301,535 + -0.5 5,301,686 + Psyr_4434 0.26 -0.8 5,301,686 + Psyr_4434 0.26 +0.0 5,301,687 - Psyr_4434 0.26 -0.1 5,301,687 - Psyr_4434 0.26 +0.6 5,301,969 - Psyr_4434 0.79 +0.1 5,301,969 - Psyr_4434 0.79 +0.3 5,301,969 - Psyr_4434 0.79 -0.0 5,301,969 - Psyr_4434 0.79 +0.2 5,301,983 + Psyr_4434 0.81 +2.0 5,301,984 - Psyr_4434 0.82 -1.4 5,301,984 - Psyr_4434 0.82 +1.2 5,302,011 - Psyr_4434 0.87 -0.7 5,302,053 - +0.0 5,302,053 - +0.7 5,302,381 + +0.2 5,302,381 + +0.7 5,302,381 + -1.9 5,302,382 - -0.7 5,302,382 - -0.7 5,302,428 + +0.9 5,302,429 - -1.7 5,302,429 - -0.1 5,302,429 - +0.1 5,302,429 - -0.6 5,302,429 - -0.1 5,302,429 - -0.3 5,302,476 + +0.5 5,302,476 + +0.1 5,302,476 + -2.8 5,302,476 + +0.2 5,302,476 + -1.0 5,302,476 + -0.5 5,302,476 + +0.4 5,302,476 + -0.2 5,302,476 + +1.0 5,302,476 + -0.0 5,302,476 + +1.0 5,302,476 + +0.3 5,302,476 + +1.3 5,302,477 - -0.1 5,302,477 - -1.9 5,302,477 - -0.2 5,302,516 + +0.1 5,302,531 + -0.1 5,302,532 - -0.5 5,302,532 - -0.3 5,302,532 - -0.6 5,302,545 + +0.1 5,302,546 - -0.6 5,302,635 + +0.2 5,302,636 - -1.9 5,302,636 - +0.4 5,302,636 - +0.3 5,302,797 - Psyr_4436 0.16 +0.2 5,303,236 - Psyr_4436 0.42 -0.6 5,303,331 + Psyr_4436 0.47 +0.4 5,303,331 + Psyr_4436 0.47 +0.3 5,303,331 + Psyr_4436 0.47 -0.0 5,303,331 + Psyr_4436 0.47 -0.4 5,303,332 - Psyr_4436 0.48 -0.1 5,303,332 - Psyr_4436 0.48 -0.2 5,303,332 - Psyr_4436 0.48 -0.9 5,303,332 - Psyr_4436 0.48 -0.8 5,303,332 - Psyr_4436 0.48 +1.1 5,303,727 + Psyr_4436 0.71 +1.3 5,303,727 + Psyr_4436 0.71 -1.1 5,303,727 + Psyr_4436 0.71 +0.6 5,303,727 + Psyr_4436 0.71 +0.2 5,303,727 + Psyr_4436 0.71 +0.3 5,303,728 - Psyr_4436 0.71 +0.9 5,303,728 - Psyr_4436 0.71 -0.3 5,303,728 - Psyr_4436 0.71 +2.5 5,303,739 + Psyr_4436 0.71 -2.7 5,303,739 + Psyr_4436 0.71 +0.5 5,303,739 + Psyr_4436 0.71 +1.5 5,303,739 + Psyr_4436 0.71 -0.8 5,303,739 + Psyr_4436 0.71 +0.5 5,303,739 + Psyr_4436 0.71 +0.7 5,303,739 + Psyr_4436 0.71 -1.7 5,303,740 - Psyr_4436 0.71 +1.1 5,303,740 - Psyr_4436 0.71 +0.2 5,303,740 - Psyr_4436 0.71 -0.2 5,303,740 - Psyr_4436 0.71 +1.1 5,303,740 - Psyr_4436 0.71 -0.0 5,303,802 - Psyr_4436 0.75 +0.9 5,303,802 - Psyr_4436 0.75 -0.4 5,304,109 - -1.9 5,304,109 - -0.9 5,304,109 - -1.0 5,304,141 + -0.6 5,304,141 + +0.9 5,304,142 - +0.9 5,304,169 + +1.9 5,304,170 - -0.3 5,304,210 + -0.3 5,304,261 + -0.3 5,304,261 + -0.3 5,304,262 - -0.4 5,304,265 + -0.4 5,304,265 + +0.6 5,304,266 - +0.4 5,304,266 - -0.1 5,304,277 + +0.9 5,304,389 + Psyr_4437 0.19 +0.8 5,304,403 + Psyr_4437 0.21 +1.1 5,304,403 + Psyr_4437 0.21 +0.6 5,304,404 - Psyr_4437 0.21 +0.5 5,304,404 - Psyr_4437 0.21 +0.3 5,304,404 - Psyr_4437 0.21 -0.1 5,304,478 - Psyr_4437 0.33 +0.2 5,304,478 - Psyr_4437 0.33 +0.2 5,304,506 + Psyr_4437 0.38 -0.1 5,304,506 + Psyr_4437 0.38 +0.3 5,304,507 - Psyr_4437 0.38 -0.1 5,304,507 - Psyr_4437 0.38 -0.7 5,304,507 - Psyr_4437 0.38 +0.5 5,304,507 - -0.7 5,304,844 - +1.0 5,304,900 - +0.1 5,305,018 + Psyr_4438 0.28 -0.3 5,305,018 + Psyr_4438 0.28 -0.1 5,305,018 + Psyr_4438 0.28 -2.0 5,305,019 - Psyr_4438 0.28 -1.1 5,305,019 - Psyr_4438 0.28 -0.0 5,305,019 - Psyr_4438 0.28 +0.8 5,305,019 - Psyr_4438 0.28 -0.8 5,305,026 - Psyr_4438 0.30 -0.2 5,305,112 + Psyr_4438 0.50 +0.5 5,305,112 + Psyr_4438 0.50 +0.3 5,305,112 + Psyr_4438 0.50 -1.8 5,305,113 - Psyr_4438 0.50 +0.3 5,305,113 - Psyr_4438 0.50 +0.1 5,305,180 + Psyr_4438 0.65 -2.4 5,305,180 + Psyr_4438 0.65 -1.2 5,305,180 + Psyr_4438 0.65 -0.5 5,305,181 - Psyr_4438 0.66 +1.0
Or see this region's nucleotide sequence