Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4081 and Psyr_4082 are separated by 125 nucleotides Psyr_4082 and Psyr_4083 overlap by 4 nucleotides Psyr_4083 and Psyr_4084 are separated by 48 nucleotides
Psyr_4081: Psyr_4081 - conserved hypothetical protein, at 4,865,712 to 4,867,754
_4081
Psyr_4082: Psyr_4082 - conserved hypothetical protein, at 4,867,880 to 4,869,439
_4082
Psyr_4083: Psyr_4083 - PAAR, at 4,869,436 to 4,869,705
_4083
Psyr_4084: Psyr_4084 - conserved hypothetical protein, at 4,869,754 to 4,871,292
_4084
Position (kb) 4867
4868
4869
4870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4866.951 kb on + strand, within Psyr_4081 at 4867.028 kb on + strand, within Psyr_4081 at 4867.030 kb on + strand, within Psyr_4081 at 4867.030 kb on + strand, within Psyr_4081 at 4867.030 kb on + strand, within Psyr_4081 at 4867.030 kb on + strand, within Psyr_4081 at 4867.030 kb on + strand, within Psyr_4081 at 4867.031 kb on - strand, within Psyr_4081 at 4867.031 kb on - strand, within Psyr_4081 at 4867.043 kb on + strand, within Psyr_4081 at 4867.043 kb on + strand, within Psyr_4081 at 4867.043 kb on + strand, within Psyr_4081 at 4867.043 kb on + strand, within Psyr_4081 at 4867.043 kb on + strand, within Psyr_4081 at 4867.044 kb on - strand, within Psyr_4081 at 4867.044 kb on - strand, within Psyr_4081 at 4867.044 kb on - strand, within Psyr_4081 at 4867.044 kb on - strand, within Psyr_4081 at 4867.048 kb on + strand, within Psyr_4081 at 4867.071 kb on + strand, within Psyr_4081 at 4867.072 kb on - strand, within Psyr_4081 at 4867.092 kb on - strand, within Psyr_4081 at 4867.212 kb on + strand, within Psyr_4081 at 4867.213 kb on - strand, within Psyr_4081 at 4867.237 kb on + strand, within Psyr_4081 at 4867.256 kb on - strand, within Psyr_4081 at 4867.360 kb on + strand, within Psyr_4081 at 4867.360 kb on + strand, within Psyr_4081 at 4867.360 kb on + strand, within Psyr_4081 at 4867.360 kb on + strand, within Psyr_4081 at 4867.360 kb on + strand, within Psyr_4081 at 4867.360 kb on + strand, within Psyr_4081 at 4867.361 kb on - strand, within Psyr_4081 at 4867.361 kb on - strand, within Psyr_4081 at 4867.361 kb on - strand, within Psyr_4081 at 4867.363 kb on + strand, within Psyr_4081 at 4867.363 kb on + strand, within Psyr_4081 at 4867.363 kb on + strand, within Psyr_4081 at 4867.364 kb on - strand, within Psyr_4081 at 4867.364 kb on - strand, within Psyr_4081 at 4867.364 kb on - strand, within Psyr_4081 at 4867.403 kb on + strand, within Psyr_4081 at 4867.430 kb on + strand, within Psyr_4081 at 4867.430 kb on + strand, within Psyr_4081 at 4867.431 kb on - strand, within Psyr_4081 at 4867.431 kb on - strand, within Psyr_4081 at 4867.431 kb on - strand, within Psyr_4081 at 4867.431 kb on - strand, within Psyr_4081 at 4867.431 kb on - strand, within Psyr_4081 at 4867.431 kb on - strand, within Psyr_4081 at 4867.434 kb on + strand, within Psyr_4081 at 4867.434 kb on + strand, within Psyr_4081 at 4867.435 kb on - strand, within Psyr_4081 at 4867.435 kb on - strand, within Psyr_4081 at 4867.435 kb on - strand, within Psyr_4081 at 4867.600 kb on + strand at 4867.601 kb on - strand at 4867.659 kb on + strand at 4867.660 kb on - strand at 4867.693 kb on + strand at 4867.693 kb on + strand at 4867.694 kb on - strand at 4867.799 kb on + strand at 4867.800 kb on - strand at 4867.803 kb on + strand at 4867.803 kb on + strand at 4867.804 kb on - strand at 4867.812 kb on + strand at 4867.813 kb on - strand at 4867.854 kb on + strand at 4867.854 kb on + strand at 4867.854 kb on + strand at 4867.854 kb on + strand at 4867.854 kb on + strand at 4867.855 kb on - strand at 4867.855 kb on - strand at 4867.855 kb on - strand at 4867.856 kb on + strand at 4867.857 kb on - strand at 4867.857 kb on - strand at 4867.860 kb on + strand at 4867.860 kb on + strand at 4867.860 kb on + strand at 4867.860 kb on + strand at 4867.860 kb on + strand at 4867.860 kb on + strand at 4867.860 kb on + strand at 4867.861 kb on - strand at 4867.896 kb on + strand at 4867.896 kb on + strand at 4867.896 kb on + strand at 4867.897 kb on - strand at 4867.932 kb on + strand at 4867.933 kb on + strand at 4867.944 kb on + strand at 4867.945 kb on - strand at 4867.947 kb on + strand at 4867.948 kb on - strand at 4867.952 kb on + strand at 4867.952 kb on + strand at 4867.952 kb on + strand at 4867.952 kb on + strand at 4867.953 kb on - strand at 4867.953 kb on - strand at 4867.953 kb on - strand at 4867.953 kb on - strand at 4867.953 kb on - strand at 4868.012 kb on - strand at 4868.012 kb on - strand at 4868.101 kb on - strand, within Psyr_4082 at 4868.101 kb on - strand, within Psyr_4082 at 4868.152 kb on + strand, within Psyr_4082 at 4868.169 kb on - strand, within Psyr_4082 at 4868.189 kb on + strand, within Psyr_4082 at 4868.190 kb on - strand, within Psyr_4082 at 4868.190 kb on - strand, within Psyr_4082 at 4868.276 kb on + strand, within Psyr_4082 at 4868.319 kb on - strand, within Psyr_4082 at 4868.376 kb on + strand, within Psyr_4082 at 4868.436 kb on + strand, within Psyr_4082 at 4868.437 kb on - strand, within Psyr_4082 at 4868.512 kb on + strand, within Psyr_4082 at 4868.521 kb on + strand, within Psyr_4082 at 4868.521 kb on + strand, within Psyr_4082 at 4868.521 kb on + strand, within Psyr_4082 at 4868.521 kb on + strand, within Psyr_4082 at 4868.522 kb on - strand, within Psyr_4082 at 4868.522 kb on - strand, within Psyr_4082 at 4868.522 kb on - strand, within Psyr_4082 at 4868.525 kb on + strand, within Psyr_4082 at 4868.630 kb on + strand, within Psyr_4082 at 4868.631 kb on - strand, within Psyr_4082 at 4868.642 kb on + strand, within Psyr_4082 at 4868.770 kb on + strand, within Psyr_4082 at 4868.770 kb on + strand, within Psyr_4082 at 4868.770 kb on + strand, within Psyr_4082 at 4868.770 kb on + strand, within Psyr_4082 at 4868.770 kb on + strand, within Psyr_4082 at 4869.194 kb on + strand, within Psyr_4082 at 4869.443 kb on - strand at 4869.712 kb on + strand at 4869.713 kb on - strand at 4869.713 kb on - strand at 4869.770 kb on + strand at 4869.770 kb on + strand at 4869.770 kb on + strand at 4869.770 kb on + strand at 4869.770 kb on + strand at 4869.771 kb on - strand at 4869.771 kb on - strand at 4869.815 kb on + strand at 4869.816 kb on - strand at 4869.826 kb on + strand at 4869.826 kb on + strand at 4869.826 kb on + strand at 4869.826 kb on + strand at 4869.826 kb on + strand at 4869.826 kb on + strand at 4869.826 kb on + strand at 4869.827 kb on - strand at 4869.827 kb on - strand at 4869.827 kb on - strand at 4869.827 kb on - strand at 4869.827 kb on - strand at 4869.876 kb on - strand at 4869.876 kb on - strand at 4869.878 kb on + strand at 4869.878 kb on + strand at 4869.879 kb on - strand at 4869.883 kb on + strand at 4869.884 kb on - strand at 4869.884 kb on - strand at 4869.908 kb on + strand, within Psyr_4084 at 4869.909 kb on - strand, within Psyr_4084 at 4869.941 kb on - strand, within Psyr_4084 at 4869.962 kb on + strand, within Psyr_4084 at 4869.962 kb on + strand, within Psyr_4084 at 4869.963 kb on - strand, within Psyr_4084 at 4870.026 kb on + strand, within Psyr_4084 at 4870.041 kb on - strand, within Psyr_4084 at 4870.042 kb on + strand, within Psyr_4084 at 4870.063 kb on - strand, within Psyr_4084 at 4870.095 kb on + strand, within Psyr_4084 at 4870.101 kb on + strand, within Psyr_4084 at 4870.107 kb on + strand, within Psyr_4084 at 4870.109 kb on + strand, within Psyr_4084 at 4870.110 kb on - strand, within Psyr_4084 at 4870.110 kb on - strand, within Psyr_4084 at 4870.237 kb on - strand, within Psyr_4084 at 4870.306 kb on - strand, within Psyr_4084 at 4870.364 kb on + strand, within Psyr_4084 at 4870.364 kb on + strand, within Psyr_4084 at 4870.364 kb on + strand, within Psyr_4084 at 4870.385 kb on + strand, within Psyr_4084
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 4,866,951 + Psyr_4081 0.61 -1.2 4,867,028 + Psyr_4081 0.64 -0.2 4,867,030 + Psyr_4081 0.65 -1.2 4,867,030 + Psyr_4081 0.65 +0.8 4,867,030 + Psyr_4081 0.65 +0.2 4,867,030 + Psyr_4081 0.65 +1.0 4,867,030 + Psyr_4081 0.65 +0.8 4,867,031 - Psyr_4081 0.65 +0.1 4,867,031 - Psyr_4081 0.65 -0.0 4,867,043 + Psyr_4081 0.65 +0.1 4,867,043 + Psyr_4081 0.65 +0.8 4,867,043 + Psyr_4081 0.65 -1.5 4,867,043 + Psyr_4081 0.65 -1.2 4,867,043 + Psyr_4081 0.65 -1.2 4,867,044 - Psyr_4081 0.65 +0.1 4,867,044 - Psyr_4081 0.65 +0.7 4,867,044 - Psyr_4081 0.65 -0.2 4,867,044 - Psyr_4081 0.65 -0.6 4,867,048 + Psyr_4081 0.65 -1.0 4,867,071 + Psyr_4081 0.67 -0.7 4,867,072 - Psyr_4081 0.67 -0.3 4,867,092 - Psyr_4081 0.68 -2.0 4,867,212 + Psyr_4081 0.73 +0.2 4,867,213 - Psyr_4081 0.73 -0.3 4,867,237 + Psyr_4081 0.75 +0.0 4,867,256 - Psyr_4081 0.76 +0.3 4,867,360 + Psyr_4081 0.81 +0.4 4,867,360 + Psyr_4081 0.81 -0.4 4,867,360 + Psyr_4081 0.81 +0.7 4,867,360 + Psyr_4081 0.81 +0.5 4,867,360 + Psyr_4081 0.81 +0.4 4,867,360 + Psyr_4081 0.81 -0.9 4,867,361 - Psyr_4081 0.81 +0.3 4,867,361 - Psyr_4081 0.81 +1.4 4,867,361 - Psyr_4081 0.81 -0.2 4,867,363 + Psyr_4081 0.81 +0.7 4,867,363 + Psyr_4081 0.81 +0.3 4,867,363 + Psyr_4081 0.81 -2.0 4,867,364 - Psyr_4081 0.81 -0.3 4,867,364 - Psyr_4081 0.81 +0.7 4,867,364 - Psyr_4081 0.81 +0.1 4,867,403 + Psyr_4081 0.83 -0.5 4,867,430 + Psyr_4081 0.84 +1.1 4,867,430 + Psyr_4081 0.84 -0.2 4,867,431 - Psyr_4081 0.84 +3.6 4,867,431 - Psyr_4081 0.84 +1.0 4,867,431 - Psyr_4081 0.84 +0.3 4,867,431 - Psyr_4081 0.84 +0.0 4,867,431 - Psyr_4081 0.84 -0.9 4,867,431 - Psyr_4081 0.84 -0.6 4,867,434 + Psyr_4081 0.84 +0.4 4,867,434 + Psyr_4081 0.84 +0.8 4,867,435 - Psyr_4081 0.84 +3.2 4,867,435 - Psyr_4081 0.84 -1.0 4,867,435 - Psyr_4081 0.84 +0.1 4,867,600 + +0.2 4,867,601 - +0.8 4,867,659 + +0.6 4,867,660 - -2.3 4,867,693 + -0.3 4,867,693 + -0.2 4,867,694 - -1.5 4,867,799 + -1.5 4,867,800 - -0.5 4,867,803 + +1.1 4,867,803 + +0.5 4,867,804 - +0.3 4,867,812 + +1.3 4,867,813 - -1.0 4,867,854 + +0.2 4,867,854 + -0.2 4,867,854 + -0.2 4,867,854 + +1.8 4,867,854 + -0.4 4,867,855 - -1.7 4,867,855 - -1.6 4,867,855 - +0.8 4,867,856 + +0.2 4,867,857 - -0.2 4,867,857 - +0.1 4,867,860 + +0.8 4,867,860 + -1.5 4,867,860 + +0.5 4,867,860 + -0.0 4,867,860 + -0.2 4,867,860 + +1.7 4,867,860 + -2.5 4,867,861 - +1.4 4,867,896 + -1.8 4,867,896 + -0.4 4,867,896 + +0.1 4,867,897 - +0.6 4,867,932 + -0.1 4,867,933 + +0.6 4,867,944 + +0.1 4,867,945 - +1.4 4,867,947 + -1.3 4,867,948 - -0.2 4,867,952 + +0.3 4,867,952 + -0.6 4,867,952 + -0.7 4,867,952 + -1.1 4,867,953 - +0.8 4,867,953 - -2.7 4,867,953 - -0.6 4,867,953 - -0.7 4,867,953 - -0.1 4,868,012 - -0.9 4,868,012 - +2.2 4,868,101 - Psyr_4082 0.14 +0.7 4,868,101 - Psyr_4082 0.14 -0.4 4,868,152 + Psyr_4082 0.17 -0.6 4,868,169 - Psyr_4082 0.19 -0.1 4,868,189 + Psyr_4082 0.20 -0.9 4,868,190 - Psyr_4082 0.20 -1.2 4,868,190 - Psyr_4082 0.20 -0.3 4,868,276 + Psyr_4082 0.25 +0.8 4,868,319 - Psyr_4082 0.28 -0.6 4,868,376 + Psyr_4082 0.32 +0.3 4,868,436 + Psyr_4082 0.36 +4.0 4,868,437 - Psyr_4082 0.36 +0.2 4,868,512 + Psyr_4082 0.41 -0.1 4,868,521 + Psyr_4082 0.41 -0.5 4,868,521 + Psyr_4082 0.41 -0.3 4,868,521 + Psyr_4082 0.41 -1.1 4,868,521 + Psyr_4082 0.41 +3.2 4,868,522 - Psyr_4082 0.41 +0.1 4,868,522 - Psyr_4082 0.41 -0.9 4,868,522 - Psyr_4082 0.41 +0.1 4,868,525 + Psyr_4082 0.41 +0.2 4,868,630 + Psyr_4082 0.48 +0.4 4,868,631 - Psyr_4082 0.48 -1.2 4,868,642 + Psyr_4082 0.49 +1.1 4,868,770 + Psyr_4082 0.57 -0.2 4,868,770 + Psyr_4082 0.57 -1.6 4,868,770 + Psyr_4082 0.57 -0.8 4,868,770 + Psyr_4082 0.57 +0.0 4,868,770 + Psyr_4082 0.57 +0.3 4,869,194 + Psyr_4082 0.84 -0.7 4,869,443 - +0.3 4,869,712 + -1.3 4,869,713 - -0.8 4,869,713 - +0.1 4,869,770 + -0.7 4,869,770 + +0.1 4,869,770 + -0.2 4,869,770 + -1.0 4,869,770 + -0.6 4,869,771 - -0.5 4,869,771 - +0.4 4,869,815 + +0.8 4,869,816 - -0.2 4,869,826 + -2.7 4,869,826 + +1.3 4,869,826 + -0.5 4,869,826 + -1.3 4,869,826 + -0.0 4,869,826 + -0.5 4,869,826 + +1.3 4,869,827 - +0.2 4,869,827 - -0.7 4,869,827 - +1.8 4,869,827 - +1.0 4,869,827 - +0.1 4,869,876 - -0.1 4,869,876 - +0.7 4,869,878 + -1.2 4,869,878 + +0.3 4,869,879 - +0.9 4,869,883 + -0.4 4,869,884 - -0.6 4,869,884 - -0.3 4,869,908 + Psyr_4084 0.10 +1.0 4,869,909 - Psyr_4084 0.10 +2.6 4,869,941 - Psyr_4084 0.12 -0.3 4,869,962 + Psyr_4084 0.14 +0.8 4,869,962 + Psyr_4084 0.14 +0.3 4,869,963 - Psyr_4084 0.14 -0.6 4,870,026 + Psyr_4084 0.18 -1.3 4,870,041 - Psyr_4084 0.19 -1.0 4,870,042 + Psyr_4084 0.19 +1.6 4,870,063 - Psyr_4084 0.20 -0.7 4,870,095 + Psyr_4084 0.22 +1.8 4,870,101 + Psyr_4084 0.23 -0.4 4,870,107 + Psyr_4084 0.23 -0.7 4,870,109 + Psyr_4084 0.23 -0.9 4,870,110 - Psyr_4084 0.23 +0.1 4,870,110 - Psyr_4084 0.23 -1.5 4,870,237 - Psyr_4084 0.31 -3.6 4,870,306 - Psyr_4084 0.36 -1.6 4,870,364 + Psyr_4084 0.40 -0.5 4,870,364 + Psyr_4084 0.40 +0.7 4,870,364 + Psyr_4084 0.40 +0.0 4,870,385 + Psyr_4084 0.41 +0.8
Or see this region's nucleotide sequence