Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4033

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4032 and Psyr_4033 are separated by 128 nucleotidesPsyr_4033 and Psyr_4034 are separated by 258 nucleotides Psyr_4032: Psyr_4032 - YD repeat protein, at 4,801,339 to 4,804,101 _4032 Psyr_4033: Psyr_4033 - YD repeat protein, at 4,804,230 to 4,807,049 _4033 Psyr_4034: Psyr_4034 - hypothetical protein, at 4,807,308 to 4,810,253 _4034 Position (kb) 4804 4805 4806 4807 4808Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4803.245 kb on + strand, within Psyr_4032at 4803.308 kb on + strand, within Psyr_4032at 4803.408 kb on + strand, within Psyr_4032at 4803.409 kb on - strand, within Psyr_4032at 4803.409 kb on - strand, within Psyr_4032at 4803.587 kb on + strand, within Psyr_4032at 4803.648 kb on + strand, within Psyr_4032at 4803.674 kb on + strand, within Psyr_4032at 4803.674 kb on + strand, within Psyr_4032at 4803.675 kb on - strand, within Psyr_4032at 4803.675 kb on - strand, within Psyr_4032at 4803.737 kb on + strand, within Psyr_4032at 4803.738 kb on - strand, within Psyr_4032at 4804.068 kb on + strandat 4804.069 kb on - strandat 4804.116 kb on + strandat 4804.125 kb on + strandat 4804.125 kb on + strandat 4804.126 kb on - strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.181 kb on + strandat 4804.182 kb on - strandat 4804.182 kb on - strandat 4804.182 kb on - strandat 4804.190 kb on + strandat 4804.191 kb on - strandat 4804.231 kb on + strandat 4804.231 kb on + strandat 4804.231 kb on + strandat 4804.231 kb on + strandat 4804.232 kb on - strandat 4804.232 kb on - strandat 4804.232 kb on - strandat 4804.232 kb on - strandat 4804.232 kb on - strandat 4804.232 kb on - strandat 4804.232 kb on - strandat 4804.235 kb on + strandat 4804.235 kb on + strandat 4804.235 kb on + strandat 4804.235 kb on + strandat 4804.235 kb on + strandat 4804.235 kb on + strandat 4804.236 kb on - strandat 4804.240 kb on + strandat 4804.241 kb on - strandat 4804.241 kb on - strandat 4804.241 kb on - strandat 4804.241 kb on - strandat 4804.307 kb on + strandat 4804.308 kb on - strandat 4804.308 kb on - strandat 4804.316 kb on + strandat 4804.404 kb on + strandat 4804.404 kb on + strandat 4804.405 kb on - strandat 4804.405 kb on - strandat 4804.443 kb on - strandat 4804.458 kb on + strandat 4804.504 kb on - strandat 4804.504 kb on - strandat 4804.543 kb on - strand, within Psyr_4033at 4804.583 kb on + strand, within Psyr_4033at 4804.583 kb on + strand, within Psyr_4033at 4804.583 kb on + strand, within Psyr_4033at 4804.583 kb on + strand, within Psyr_4033at 4804.584 kb on - strand, within Psyr_4033at 4804.585 kb on + strand, within Psyr_4033at 4804.585 kb on + strand, within Psyr_4033at 4804.585 kb on + strand, within Psyr_4033at 4804.585 kb on + strand, within Psyr_4033at 4804.585 kb on + strand, within Psyr_4033at 4804.586 kb on - strand, within Psyr_4033at 4804.586 kb on - strand, within Psyr_4033at 4804.586 kb on - strand, within Psyr_4033at 4804.592 kb on - strand, within Psyr_4033at 4804.638 kb on + strand, within Psyr_4033at 4804.690 kb on - strand, within Psyr_4033at 4804.719 kb on - strand, within Psyr_4033at 4804.783 kb on + strand, within Psyr_4033at 4804.783 kb on + strand, within Psyr_4033at 4804.784 kb on - strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.850 kb on + strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.851 kb on - strand, within Psyr_4033at 4804.907 kb on + strand, within Psyr_4033at 4804.907 kb on + strand, within Psyr_4033at 4804.930 kb on + strand, within Psyr_4033at 4804.930 kb on + strand, within Psyr_4033at 4804.967 kb on + strand, within Psyr_4033at 4804.968 kb on - strand, within Psyr_4033at 4804.968 kb on - strand, within Psyr_4033at 4805.074 kb on + strand, within Psyr_4033at 4805.097 kb on + strand, within Psyr_4033at 4805.098 kb on - strand, within Psyr_4033at 4805.100 kb on - strand, within Psyr_4033at 4805.100 kb on - strand, within Psyr_4033at 4805.105 kb on + strand, within Psyr_4033at 4805.105 kb on + strand, within Psyr_4033at 4805.138 kb on - strand, within Psyr_4033at 4805.154 kb on + strand, within Psyr_4033at 4805.154 kb on + strand, within Psyr_4033at 4805.155 kb on - strand, within Psyr_4033at 4805.155 kb on - strand, within Psyr_4033at 4805.155 kb on - strand, within Psyr_4033at 4805.203 kb on + strand, within Psyr_4033at 4805.203 kb on + strand, within Psyr_4033at 4805.204 kb on - strand, within Psyr_4033at 4805.206 kb on + strand, within Psyr_4033at 4805.206 kb on + strand, within Psyr_4033at 4805.221 kb on + strand, within Psyr_4033at 4805.221 kb on + strand, within Psyr_4033at 4805.221 kb on + strand, within Psyr_4033at 4805.222 kb on - strand, within Psyr_4033at 4805.224 kb on + strand, within Psyr_4033at 4805.224 kb on + strand, within Psyr_4033at 4805.273 kb on - strand, within Psyr_4033at 4805.273 kb on - strand, within Psyr_4033at 4805.330 kb on - strand, within Psyr_4033at 4805.330 kb on - strand, within Psyr_4033at 4805.623 kb on + strand, within Psyr_4033at 4805.623 kb on + strand, within Psyr_4033at 4805.623 kb on + strand, within Psyr_4033at 4805.624 kb on - strand, within Psyr_4033at 4805.629 kb on + strand, within Psyr_4033at 4805.629 kb on + strand, within Psyr_4033at 4805.629 kb on + strand, within Psyr_4033at 4805.629 kb on + strand, within Psyr_4033at 4805.630 kb on - strand, within Psyr_4033at 4805.630 kb on - strand, within Psyr_4033at 4805.630 kb on - strand, within Psyr_4033at 4805.630 kb on - strand, within Psyr_4033at 4805.885 kb on - strand, within Psyr_4033at 4805.891 kb on - strand, within Psyr_4033at 4805.891 kb on - strand, within Psyr_4033at 4805.891 kb on - strand, within Psyr_4033at 4805.891 kb on - strand, within Psyr_4033at 4805.903 kb on - strand, within Psyr_4033at 4805.903 kb on - strand, within Psyr_4033at 4805.903 kb on - strand, within Psyr_4033at 4805.903 kb on - strand, within Psyr_4033at 4806.013 kb on + strand, within Psyr_4033at 4806.013 kb on + strand, within Psyr_4033at 4806.013 kb on + strand, within Psyr_4033at 4806.014 kb on - strand, within Psyr_4033at 4806.014 kb on - strand, within Psyr_4033at 4806.026 kb on - strand, within Psyr_4033at 4806.100 kb on - strand, within Psyr_4033at 4806.100 kb on - strand, within Psyr_4033at 4806.265 kb on + strand, within Psyr_4033at 4806.545 kb on - strand, within Psyr_4033at 4806.605 kb on + strand, within Psyr_4033at 4806.631 kb on + strand, within Psyr_4033at 4806.631 kb on + strand, within Psyr_4033at 4806.631 kb on + strand, within Psyr_4033at 4806.631 kb on + strand, within Psyr_4033at 4806.694 kb on + strand, within Psyr_4033at 4806.695 kb on - strand, within Psyr_4033at 4806.695 kb on - strand, within Psyr_4033at 4806.739 kb on - strand, within Psyr_4033at 4806.856 kb on + strandat 4806.856 kb on + strandat 4806.856 kb on + strandat 4806.857 kb on - strandat 4806.857 kb on - strandat 4806.857 kb on - strandat 4806.919 kb on + strandat 4806.920 kb on - strandat 4806.920 kb on - strandat 4806.967 kb on + strandat 4807.026 kb on - strandat 4807.091 kb on + strandat 4807.091 kb on + strandat 4807.091 kb on + strandat 4807.170 kb on - strandat 4807.171 kb on + strandat 4807.171 kb on + strandat 4807.172 kb on - strandat 4807.172 kb on - strandat 4807.172 kb on - strandat 4807.205 kb on - strandat 4807.253 kb on + strandat 4807.333 kb on + strandat 4807.333 kb on + strandat 4807.334 kb on - strandat 4807.481 kb on + strandat 4807.481 kb on + strandat 4807.481 kb on + strandat 4807.481 kb on + strandat 4807.481 kb on + strandat 4807.482 kb on - strandat 4807.482 kb on - strandat 4807.482 kb on - strandat 4807.622 kb on - strand, within Psyr_4034at 4807.691 kb on - strand, within Psyr_4034at 4807.716 kb on + strand, within Psyr_4034at 4807.717 kb on - strand, within Psyr_4034at 4807.857 kb on - strand, within Psyr_4034at 4807.882 kb on + strand, within Psyr_4034at 4807.883 kb on - strand, within Psyr_4034at 4807.883 kb on - strand, within Psyr_4034at 4807.886 kb on + strand, within Psyr_4034at 4807.886 kb on + strand, within Psyr_4034at 4807.886 kb on + strand, within Psyr_4034at 4807.886 kb on + strand, within Psyr_4034at 4807.886 kb on + strand, within Psyr_4034at 4807.886 kb on + strand, within Psyr_4034at 4807.887 kb on - strand, within Psyr_4034at 4807.887 kb on - strand, within Psyr_4034at 4807.887 kb on - strand, within Psyr_4034at 4807.887 kb on - strand, within Psyr_4034at 4807.902 kb on + strand, within Psyr_4034at 4807.903 kb on - strand, within Psyr_4034at 4807.903 kb on - strand, within Psyr_4034at 4807.903 kb on - strand, within Psyr_4034at 4807.937 kb on + strand, within Psyr_4034at 4807.937 kb on + strand, within Psyr_4034at 4807.938 kb on - strand, within Psyr_4034at 4807.938 kb on - strand, within Psyr_4034at 4807.938 kb on - strand, within Psyr_4034at 4807.938 kb on - strand, within Psyr_4034at 4807.938 kb on - strand, within Psyr_4034at 4807.942 kb on - strand, within Psyr_4034at 4807.942 kb on - strand, within Psyr_4034at 4807.983 kb on + strand, within Psyr_4034at 4807.983 kb on + strand, within Psyr_4034at 4807.984 kb on - strand, within Psyr_4034

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,803,245 + Psyr_4032 0.69 -0.5
4,803,308 + Psyr_4032 0.71 +1.6
4,803,408 + Psyr_4032 0.75 +0.4
4,803,409 - Psyr_4032 0.75 +0.4
4,803,409 - Psyr_4032 0.75 -0.5
4,803,587 + Psyr_4032 0.81 -0.5
4,803,648 + Psyr_4032 0.84 +1.8
4,803,674 + Psyr_4032 0.85 +1.7
4,803,674 + Psyr_4032 0.85 +1.3
4,803,675 - Psyr_4032 0.85 -1.0
4,803,675 - Psyr_4032 0.85 -0.9
4,803,737 + Psyr_4032 0.87 +1.8
4,803,738 - Psyr_4032 0.87 -0.6
4,804,068 + -2.6
4,804,069 - +1.5
4,804,116 + +0.8
4,804,125 + -1.3
4,804,125 + -0.7
4,804,126 - +0.6
4,804,181 + -0.1
4,804,181 + -2.3
4,804,181 + -1.1
4,804,181 + -0.4
4,804,181 + +0.2
4,804,181 + -1.2
4,804,181 + -0.2
4,804,181 + -1.9
4,804,182 - +1.0
4,804,182 - -0.1
4,804,182 - +0.2
4,804,190 + -1.2
4,804,191 - -1.3
4,804,231 + -0.1
4,804,231 + +0.0
4,804,231 + -0.8
4,804,231 + -1.4
4,804,232 - +0.7
4,804,232 - +0.5
4,804,232 - -0.4
4,804,232 - -2.2
4,804,232 - +0.2
4,804,232 - +0.4
4,804,232 - -0.3
4,804,235 + -2.2
4,804,235 + -0.9
4,804,235 + -0.8
4,804,235 + -1.2
4,804,235 + -1.7
4,804,235 + -1.2
4,804,236 - +0.1
4,804,240 + -0.9
4,804,241 - -0.8
4,804,241 - +0.6
4,804,241 - +1.8
4,804,241 - +1.6
4,804,307 + -2.2
4,804,308 - +0.2
4,804,308 - -0.6
4,804,316 + -1.5
4,804,404 + -0.3
4,804,404 + -1.2
4,804,405 - -1.1
4,804,405 - +0.0
4,804,443 - -0.7
4,804,458 + -0.3
4,804,504 - +1.4
4,804,504 - -0.9
4,804,543 - Psyr_4033 0.11 -1.2
4,804,583 + Psyr_4033 0.13 -2.5
4,804,583 + Psyr_4033 0.13 -1.8
4,804,583 + Psyr_4033 0.13 -1.8
4,804,583 + Psyr_4033 0.13 -2.6
4,804,584 - Psyr_4033 0.13 -0.8
4,804,585 + Psyr_4033 0.13 -0.8
4,804,585 + Psyr_4033 0.13 -0.8
4,804,585 + Psyr_4033 0.13 -1.5
4,804,585 + Psyr_4033 0.13 -0.4
4,804,585 + Psyr_4033 0.13 -1.9
4,804,586 - Psyr_4033 0.13 +0.5
4,804,586 - Psyr_4033 0.13 +0.2
4,804,586 - Psyr_4033 0.13 -0.4
4,804,592 - Psyr_4033 0.13 -0.0
4,804,638 + Psyr_4033 0.14 +0.0
4,804,690 - Psyr_4033 0.16 -2.0
4,804,719 - Psyr_4033 0.17 -0.2
4,804,783 + Psyr_4033 0.20 -1.0
4,804,783 + Psyr_4033 0.20 +1.8
4,804,784 - Psyr_4033 0.20 -0.5
4,804,850 + Psyr_4033 0.22 +0.3
4,804,850 + Psyr_4033 0.22 -2.0
4,804,850 + Psyr_4033 0.22 -2.4
4,804,850 + Psyr_4033 0.22 +0.8
4,804,850 + Psyr_4033 0.22 -0.9
4,804,850 + Psyr_4033 0.22 +0.6
4,804,850 + Psyr_4033 0.22 -1.0
4,804,850 + Psyr_4033 0.22 +0.1
4,804,851 - Psyr_4033 0.22 +0.8
4,804,851 - Psyr_4033 0.22 -0.0
4,804,851 - Psyr_4033 0.22 +2.4
4,804,851 - Psyr_4033 0.22 +1.1
4,804,851 - Psyr_4033 0.22 -0.2
4,804,851 - Psyr_4033 0.22 -1.5
4,804,851 - Psyr_4033 0.22 +0.8
4,804,851 - Psyr_4033 0.22 +0.7
4,804,851 - Psyr_4033 0.22 +0.0
4,804,851 - Psyr_4033 0.22 -0.5
4,804,851 - Psyr_4033 0.22 +1.6
4,804,851 - Psyr_4033 0.22 -0.4
4,804,907 + Psyr_4033 0.24 -2.6
4,804,907 + Psyr_4033 0.24 -1.9
4,804,930 + Psyr_4033 0.25 -1.2
4,804,930 + Psyr_4033 0.25 -1.0
4,804,967 + Psyr_4033 0.26 -2.5
4,804,968 - Psyr_4033 0.26 +1.3
4,804,968 - Psyr_4033 0.26 +0.4
4,805,074 + Psyr_4033 0.30 -2.8
4,805,097 + Psyr_4033 0.31 -0.5
4,805,098 - Psyr_4033 0.31 +0.2
4,805,100 - Psyr_4033 0.31 -0.6
4,805,100 - Psyr_4033 0.31 +0.9
4,805,105 + Psyr_4033 0.31 -1.9
4,805,105 + Psyr_4033 0.31 -3.0
4,805,138 - Psyr_4033 0.32 -1.5
4,805,154 + Psyr_4033 0.33 +0.8
4,805,154 + Psyr_4033 0.33 -0.7
4,805,155 - Psyr_4033 0.33 -0.2
4,805,155 - Psyr_4033 0.33 -1.5
4,805,155 - Psyr_4033 0.33 +0.2
4,805,203 + Psyr_4033 0.35 -2.3
4,805,203 + Psyr_4033 0.35 +0.4
4,805,204 - Psyr_4033 0.35 +0.3
4,805,206 + Psyr_4033 0.35 -0.8
4,805,206 + Psyr_4033 0.35 +0.2
4,805,221 + Psyr_4033 0.35 -1.7
4,805,221 + Psyr_4033 0.35 +1.1
4,805,221 + Psyr_4033 0.35 -0.8
4,805,222 - Psyr_4033 0.35 +0.5
4,805,224 + Psyr_4033 0.35 +0.1
4,805,224 + Psyr_4033 0.35 +0.4
4,805,273 - Psyr_4033 0.37 +0.0
4,805,273 - Psyr_4033 0.37 -0.6
4,805,330 - Psyr_4033 0.39 -0.5
4,805,330 - Psyr_4033 0.39 -0.8
4,805,623 + Psyr_4033 0.49 -0.8
4,805,623 + Psyr_4033 0.49 +0.3
4,805,623 + Psyr_4033 0.49 +0.6
4,805,624 - Psyr_4033 0.49 -1.8
4,805,629 + Psyr_4033 0.50 -0.2
4,805,629 + Psyr_4033 0.50 -1.2
4,805,629 + Psyr_4033 0.50 -0.2
4,805,629 + Psyr_4033 0.50 +0.5
4,805,630 - Psyr_4033 0.50 +1.0
4,805,630 - Psyr_4033 0.50 +0.5
4,805,630 - Psyr_4033 0.50 -0.5
4,805,630 - Psyr_4033 0.50 -0.2
4,805,885 - Psyr_4033 0.59 +0.5
4,805,891 - Psyr_4033 0.59 -0.8
4,805,891 - Psyr_4033 0.59 -0.5
4,805,891 - Psyr_4033 0.59 +0.3
4,805,891 - Psyr_4033 0.59 +0.4
4,805,903 - Psyr_4033 0.59 +0.4
4,805,903 - Psyr_4033 0.59 -0.2
4,805,903 - Psyr_4033 0.59 +0.3
4,805,903 - Psyr_4033 0.59 -0.3
4,806,013 + Psyr_4033 0.63 +0.0
4,806,013 + Psyr_4033 0.63 -1.5
4,806,013 + Psyr_4033 0.63 -2.0
4,806,014 - Psyr_4033 0.63 -0.4
4,806,014 - Psyr_4033 0.63 -0.3
4,806,026 - Psyr_4033 0.64 +0.8
4,806,100 - Psyr_4033 0.66 +0.3
4,806,100 - Psyr_4033 0.66 +0.8
4,806,265 + Psyr_4033 0.72 -0.8
4,806,545 - Psyr_4033 0.82 +0.6
4,806,605 + Psyr_4033 0.84 -0.5
4,806,631 + Psyr_4033 0.85 +1.8
4,806,631 + Psyr_4033 0.85 -0.5
4,806,631 + Psyr_4033 0.85 -0.4
4,806,631 + Psyr_4033 0.85 -0.1
4,806,694 + Psyr_4033 0.87 -0.4
4,806,695 - Psyr_4033 0.87 -1.6
4,806,695 - Psyr_4033 0.87 +0.3
4,806,739 - Psyr_4033 0.89 +0.6
4,806,856 + +0.4
4,806,856 + +0.3
4,806,856 + +0.0
4,806,857 - +0.0
4,806,857 - -0.2
4,806,857 - +0.0
4,806,919 + -0.3
4,806,920 - -0.8
4,806,920 - -0.9
4,806,967 + -1.2
4,807,026 - -1.8
4,807,091 + +0.3
4,807,091 + +0.4
4,807,091 + -0.7
4,807,170 - -0.4
4,807,171 + -0.3
4,807,171 + -1.3
4,807,172 - +0.5
4,807,172 - -0.4
4,807,172 - -0.5
4,807,205 - +0.8
4,807,253 + -1.2
4,807,333 + -1.2
4,807,333 + -0.5
4,807,334 - -0.2
4,807,481 + +0.0
4,807,481 + +0.0
4,807,481 + +0.6
4,807,481 + -1.8
4,807,481 + +0.8
4,807,482 - -0.3
4,807,482 - +0.1
4,807,482 - -0.5
4,807,622 - Psyr_4034 0.11 -0.2
4,807,691 - Psyr_4034 0.13 -1.9
4,807,716 + Psyr_4034 0.14 +0.8
4,807,717 - Psyr_4034 0.14 +0.3
4,807,857 - Psyr_4034 0.19 +0.5
4,807,882 + Psyr_4034 0.19 -0.5
4,807,883 - Psyr_4034 0.20 -0.5
4,807,883 - Psyr_4034 0.20 +1.0
4,807,886 + Psyr_4034 0.20 -0.8
4,807,886 + Psyr_4034 0.20 -0.8
4,807,886 + Psyr_4034 0.20 +0.2
4,807,886 + Psyr_4034 0.20 -0.8
4,807,886 + Psyr_4034 0.20 -0.7
4,807,886 + Psyr_4034 0.20 +0.6
4,807,887 - Psyr_4034 0.20 +3.2
4,807,887 - Psyr_4034 0.20 +0.2
4,807,887 - Psyr_4034 0.20 +0.6
4,807,887 - Psyr_4034 0.20 -0.3
4,807,902 + Psyr_4034 0.20 +0.5
4,807,903 - Psyr_4034 0.20 +0.4
4,807,903 - Psyr_4034 0.20 -0.2
4,807,903 - Psyr_4034 0.20 +0.3
4,807,937 + Psyr_4034 0.21 -1.2
4,807,937 + Psyr_4034 0.21 +1.1
4,807,938 - Psyr_4034 0.21 -0.6
4,807,938 - Psyr_4034 0.21 -1.0
4,807,938 - Psyr_4034 0.21 +0.1
4,807,938 - Psyr_4034 0.21 -0.2
4,807,938 - Psyr_4034 0.21 +3.6
4,807,942 - Psyr_4034 0.22 -0.4
4,807,942 - Psyr_4034 0.22 -0.3
4,807,983 + Psyr_4034 0.23 -0.3
4,807,983 + Psyr_4034 0.23 +1.3
4,807,984 - Psyr_4034 0.23 -1.0

Or see this region's nucleotide sequence