Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3515

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3514 and Psyr_3515 are separated by 255 nucleotidesPsyr_3515 and Psyr_3516 are separated by 23 nucleotides Psyr_3514: Psyr_3514 - delta-1-piperideine-6-carboxylate dehydrogenase, at 4,189,297 to 4,190,787 _3514 Psyr_3515: Psyr_3515 - 4-aminobutyrate aminotransferase apoenzyme, at 4,191,043 to 4,192,290 _3515 Psyr_3516: Psyr_3516 - Protein of unknown function DUF1338, at 4,192,314 to 4,193,705 _3516 Position (kb) 4191 4192 4193Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4190.429 kb on + strand, within Psyr_3514at 4190.430 kb on - strand, within Psyr_3514at 4190.430 kb on - strand, within Psyr_3514at 4190.430 kb on - strand, within Psyr_3514at 4190.551 kb on - strand, within Psyr_3514at 4190.551 kb on - strand, within Psyr_3514at 4190.551 kb on - strand, within Psyr_3514at 4190.551 kb on - strand, within Psyr_3514at 4190.563 kb on + strand, within Psyr_3514at 4190.563 kb on + strand, within Psyr_3514at 4190.563 kb on + strand, within Psyr_3514at 4190.564 kb on - strand, within Psyr_3514at 4190.564 kb on - strand, within Psyr_3514at 4190.564 kb on - strand, within Psyr_3514at 4190.657 kb on - strandat 4190.718 kb on - strandat 4190.770 kb on + strandat 4190.770 kb on + strandat 4190.773 kb on + strandat 4190.773 kb on + strandat 4190.773 kb on + strandat 4190.838 kb on - strandat 4190.860 kb on + strandat 4190.915 kb on + strandat 4190.915 kb on + strandat 4190.915 kb on + strandat 4190.935 kb on - strandat 4191.139 kb on + strandat 4191.140 kb on - strandat 4191.140 kb on - strandat 4191.140 kb on - strandat 4191.268 kb on + strand, within Psyr_3515at 4191.268 kb on + strand, within Psyr_3515at 4191.269 kb on - strand, within Psyr_3515at 4191.269 kb on - strand, within Psyr_3515at 4191.476 kb on - strand, within Psyr_3515at 4191.478 kb on - strand, within Psyr_3515at 4191.904 kb on + strand, within Psyr_3515at 4191.904 kb on + strand, within Psyr_3515at 4191.905 kb on - strand, within Psyr_3515at 4191.905 kb on - strand, within Psyr_3515at 4191.905 kb on - strand, within Psyr_3515at 4191.905 kb on - strand, within Psyr_3515at 4191.905 kb on - strand, within Psyr_3515at 4192.048 kb on + strand, within Psyr_3515at 4192.257 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.383 kb on + strandat 4192.384 kb on - strandat 4192.384 kb on - strandat 4192.384 kb on - strandat 4192.404 kb on + strandat 4192.404 kb on + strandat 4192.605 kb on + strand, within Psyr_3516at 4192.606 kb on - strand, within Psyr_3516at 4192.608 kb on + strand, within Psyr_3516at 4192.609 kb on - strand, within Psyr_3516at 4192.609 kb on - strand, within Psyr_3516at 4192.778 kb on + strand, within Psyr_3516at 4192.779 kb on - strand, within Psyr_3516at 4192.921 kb on - strand, within Psyr_3516at 4193.244 kb on + strand, within Psyr_3516at 4193.245 kb on - strand, within Psyr_3516at 4193.245 kb on - strand, within Psyr_3516

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,190,429 + Psyr_3514 0.76 +1.1
4,190,430 - Psyr_3514 0.76 -0.5
4,190,430 - Psyr_3514 0.76 -0.5
4,190,430 - Psyr_3514 0.76 -0.8
4,190,551 - Psyr_3514 0.84 +0.7
4,190,551 - Psyr_3514 0.84 +0.7
4,190,551 - Psyr_3514 0.84 +1.0
4,190,551 - Psyr_3514 0.84 +0.0
4,190,563 + Psyr_3514 0.85 -2.6
4,190,563 + Psyr_3514 0.85 +0.2
4,190,563 + Psyr_3514 0.85 -0.4
4,190,564 - Psyr_3514 0.85 +1.7
4,190,564 - Psyr_3514 0.85 +0.3
4,190,564 - Psyr_3514 0.85 -0.4
4,190,657 - -0.5
4,190,718 - -2.1
4,190,770 + +0.2
4,190,770 + +0.9
4,190,773 + +1.5
4,190,773 + -1.3
4,190,773 + +0.1
4,190,838 - +0.3
4,190,860 + +0.3
4,190,915 + +1.6
4,190,915 + -0.2
4,190,915 + +1.0
4,190,935 - +0.4
4,191,139 + -0.8
4,191,140 - -1.3
4,191,140 - -0.4
4,191,140 - +0.3
4,191,268 + Psyr_3515 0.18 -2.0
4,191,268 + Psyr_3515 0.18 -0.7
4,191,269 - Psyr_3515 0.18 +0.0
4,191,269 - Psyr_3515 0.18 +0.6
4,191,476 - Psyr_3515 0.35 -1.3
4,191,478 - Psyr_3515 0.35 +0.0
4,191,904 + Psyr_3515 0.69 -0.8
4,191,904 + Psyr_3515 0.69 -0.8
4,191,905 - Psyr_3515 0.69 -0.7
4,191,905 - Psyr_3515 0.69 +1.6
4,191,905 - Psyr_3515 0.69 -0.5
4,191,905 - Psyr_3515 0.69 -1.1
4,191,905 - Psyr_3515 0.69 +0.5
4,192,048 + Psyr_3515 0.81 -1.6
4,192,257 + -1.1
4,192,383 + -0.2
4,192,383 + -1.8
4,192,383 + +1.0
4,192,383 + +0.1
4,192,383 + +0.9
4,192,383 + +1.3
4,192,383 + +0.3
4,192,383 + -1.4
4,192,384 - -0.7
4,192,384 - +0.8
4,192,384 - +1.1
4,192,404 + -0.8
4,192,404 + -0.7
4,192,605 + Psyr_3516 0.21 +1.0
4,192,606 - Psyr_3516 0.21 -0.8
4,192,608 + Psyr_3516 0.21 +0.8
4,192,609 - Psyr_3516 0.21 +0.0
4,192,609 - Psyr_3516 0.21 -0.8
4,192,778 + Psyr_3516 0.33 +1.5
4,192,779 - Psyr_3516 0.33 +2.9
4,192,921 - Psyr_3516 0.44 -0.4
4,193,244 + Psyr_3516 0.67 +0.2
4,193,245 - Psyr_3516 0.67 +0.0
4,193,245 - Psyr_3516 0.67 +1.2

Or see this region's nucleotide sequence