Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3501 and Psyr_3502 are separated by 307 nucleotides Psyr_3502 and Psyr_3503 are separated by 161 nucleotides Psyr_3503 and Psyr_3504 are separated by 47 nucleotides
Psyr_3501: Psyr_3501 - General substrate transporter:Major facilitator superfamily, at 4,171,982 to 4,173,307
_3501
Psyr_3502: Psyr_3502 - membrane protein, putative, at 4,173,615 to 4,177,013
_3502
Psyr_3503: Psyr_3503 - conserved hypothetical protein, at 4,177,175 to 4,177,702
_3503
Psyr_3504: Psyr_3504 - GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,177,750 to 4,179,987
_3504
Position (kb) 4173
4174
4175
4176
4177
4178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4172.740 kb on - strand, within Psyr_3501 at 4172.755 kb on + strand, within Psyr_3501 at 4172.755 kb on + strand, within Psyr_3501 at 4172.759 kb on + strand, within Psyr_3501 at 4172.759 kb on + strand, within Psyr_3501 at 4172.759 kb on + strand, within Psyr_3501 at 4172.759 kb on + strand, within Psyr_3501 at 4172.759 kb on + strand, within Psyr_3501 at 4172.760 kb on - strand, within Psyr_3501 at 4172.760 kb on - strand, within Psyr_3501 at 4172.760 kb on - strand, within Psyr_3501 at 4172.760 kb on - strand, within Psyr_3501 at 4172.760 kb on - strand, within Psyr_3501 at 4172.760 kb on - strand, within Psyr_3501 at 4173.031 kb on + strand, within Psyr_3501 at 4173.168 kb on - strand, within Psyr_3501 at 4173.218 kb on + strand at 4173.219 kb on - strand at 4173.389 kb on + strand at 4173.412 kb on + strand at 4173.433 kb on + strand at 4173.434 kb on - strand at 4173.434 kb on - strand at 4173.434 kb on - strand at 4173.468 kb on + strand at 4173.469 kb on - strand at 4173.837 kb on + strand at 4173.837 kb on + strand at 4173.837 kb on + strand at 4173.837 kb on + strand at 4173.837 kb on + strand at 4173.837 kb on + strand at 4173.855 kb on + strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.871 kb on - strand at 4173.876 kb on + strand at 4173.906 kb on + strand at 4173.906 kb on + strand at 4173.906 kb on + strand at 4173.906 kb on + strand at 4173.906 kb on + strand at 4173.906 kb on + strand at 4173.907 kb on - strand at 4174.141 kb on - strand, within Psyr_3502 at 4174.184 kb on + strand, within Psyr_3502 at 4174.184 kb on + strand, within Psyr_3502 at 4174.218 kb on + strand, within Psyr_3502 at 4174.218 kb on + strand, within Psyr_3502 at 4174.218 kb on + strand, within Psyr_3502 at 4174.218 kb on + strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.219 kb on - strand, within Psyr_3502 at 4174.498 kb on + strand, within Psyr_3502 at 4174.498 kb on + strand, within Psyr_3502 at 4174.498 kb on + strand, within Psyr_3502 at 4174.498 kb on + strand, within Psyr_3502 at 4174.498 kb on + strand, within Psyr_3502 at 4174.499 kb on - strand, within Psyr_3502 at 4174.499 kb on - strand, within Psyr_3502 at 4174.499 kb on - strand, within Psyr_3502 at 4174.569 kb on + strand, within Psyr_3502 at 4174.570 kb on - strand, within Psyr_3502 at 4174.591 kb on - strand, within Psyr_3502 at 4174.668 kb on - strand, within Psyr_3502 at 4175.408 kb on + strand, within Psyr_3502 at 4175.468 kb on - strand, within Psyr_3502 at 4175.520 kb on + strand, within Psyr_3502 at 4175.626 kb on - strand, within Psyr_3502 at 4175.789 kb on + strand, within Psyr_3502 at 4175.789 kb on + strand, within Psyr_3502 at 4175.793 kb on + strand, within Psyr_3502 at 4175.794 kb on - strand, within Psyr_3502 at 4175.804 kb on + strand, within Psyr_3502 at 4175.804 kb on + strand, within Psyr_3502 at 4175.851 kb on - strand, within Psyr_3502 at 4175.851 kb on - strand, within Psyr_3502 at 4175.864 kb on + strand, within Psyr_3502 at 4175.864 kb on + strand, within Psyr_3502 at 4175.864 kb on + strand, within Psyr_3502 at 4175.864 kb on + strand, within Psyr_3502 at 4175.864 kb on + strand, within Psyr_3502 at 4175.864 kb on + strand, within Psyr_3502 at 4175.865 kb on - strand, within Psyr_3502 at 4175.865 kb on - strand, within Psyr_3502 at 4175.865 kb on - strand, within Psyr_3502 at 4175.865 kb on - strand, within Psyr_3502 at 4175.870 kb on + strand, within Psyr_3502 at 4175.871 kb on - strand, within Psyr_3502 at 4175.875 kb on + strand, within Psyr_3502 at 4175.953 kb on + strand, within Psyr_3502 at 4175.953 kb on + strand, within Psyr_3502 at 4175.953 kb on + strand, within Psyr_3502 at 4175.954 kb on - strand, within Psyr_3502 at 4175.954 kb on - strand, within Psyr_3502 at 4176.029 kb on + strand, within Psyr_3502 at 4176.029 kb on + strand, within Psyr_3502 at 4176.074 kb on + strand, within Psyr_3502 at 4176.074 kb on + strand, within Psyr_3502 at 4176.139 kb on + strand, within Psyr_3502 at 4176.140 kb on - strand, within Psyr_3502 at 4176.254 kb on + strand, within Psyr_3502 at 4176.272 kb on - strand, within Psyr_3502 at 4176.297 kb on - strand, within Psyr_3502 at 4176.376 kb on - strand, within Psyr_3502 at 4176.474 kb on + strand, within Psyr_3502 at 4176.490 kb on + strand, within Psyr_3502 at 4176.490 kb on + strand, within Psyr_3502 at 4176.491 kb on - strand, within Psyr_3502 at 4176.491 kb on - strand, within Psyr_3502 at 4176.491 kb on - strand, within Psyr_3502 at 4176.491 kb on - strand, within Psyr_3502 at 4176.507 kb on + strand, within Psyr_3502 at 4176.508 kb on - strand, within Psyr_3502 at 4176.508 kb on - strand, within Psyr_3502 at 4176.538 kb on + strand, within Psyr_3502 at 4176.563 kb on - strand, within Psyr_3502 at 4176.619 kb on + strand, within Psyr_3502 at 4176.619 kb on + strand, within Psyr_3502 at 4176.619 kb on + strand, within Psyr_3502 at 4176.626 kb on - strand, within Psyr_3502 at 4176.703 kb on + strand at 4176.704 kb on - strand at 4176.744 kb on + strand at 4176.744 kb on + strand at 4176.744 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.816 kb on + strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.817 kb on - strand at 4176.819 kb on - strand at 4176.883 kb on + strand at 4177.010 kb on - strand at 4177.120 kb on - strand at 4177.134 kb on - strand at 4177.134 kb on - strand at 4177.137 kb on + strand at 4177.155 kb on - strand at 4177.212 kb on + strand at 4177.212 kb on + strand at 4177.216 kb on - strand at 4177.274 kb on + strand, within Psyr_3503 at 4177.274 kb on + strand, within Psyr_3503 at 4177.274 kb on + strand, within Psyr_3503 at 4177.275 kb on - strand, within Psyr_3503 at 4177.275 kb on - strand, within Psyr_3503 at 4177.275 kb on - strand, within Psyr_3503 at 4177.275 kb on - strand, within Psyr_3503 at 4177.280 kb on + strand, within Psyr_3503 at 4177.280 kb on + strand, within Psyr_3503 at 4177.280 kb on + strand, within Psyr_3503 at 4177.313 kb on + strand, within Psyr_3503 at 4177.314 kb on - strand, within Psyr_3503 at 4177.380 kb on + strand, within Psyr_3503 at 4177.380 kb on + strand, within Psyr_3503 at 4177.558 kb on + strand, within Psyr_3503 at 4177.625 kb on + strand, within Psyr_3503 at 4177.625 kb on + strand, within Psyr_3503 at 4177.626 kb on - strand, within Psyr_3503 at 4177.626 kb on - strand, within Psyr_3503 at 4177.667 kb on + strand at 4177.667 kb on + strand at 4177.667 kb on + strand at 4177.667 kb on + strand at 4177.667 kb on + strand at 4177.667 kb on + strand at 4177.667 kb on + strand at 4177.668 kb on - strand at 4177.668 kb on - strand at 4177.668 kb on - strand at 4177.668 kb on - strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.853 kb on + strand at 4177.854 kb on - strand at 4177.854 kb on - strand at 4177.854 kb on - strand at 4177.854 kb on - strand at 4177.854 kb on - strand at 4177.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 4,172,740 - Psyr_3501 0.57 +0.3 4,172,755 + Psyr_3501 0.58 -0.5 4,172,755 + Psyr_3501 0.58 +0.4 4,172,759 + Psyr_3501 0.59 -0.5 4,172,759 + Psyr_3501 0.59 -0.8 4,172,759 + Psyr_3501 0.59 +0.1 4,172,759 + Psyr_3501 0.59 +0.6 4,172,759 + Psyr_3501 0.59 +0.3 4,172,760 - Psyr_3501 0.59 +1.6 4,172,760 - Psyr_3501 0.59 +0.1 4,172,760 - Psyr_3501 0.59 -0.4 4,172,760 - Psyr_3501 0.59 +0.2 4,172,760 - Psyr_3501 0.59 +1.0 4,172,760 - Psyr_3501 0.59 +0.7 4,173,031 + Psyr_3501 0.79 -0.0 4,173,168 - Psyr_3501 0.89 -1.0 4,173,218 + -0.7 4,173,219 - +1.1 4,173,389 + -1.7 4,173,412 + -0.1 4,173,433 + -1.0 4,173,434 - +0.7 4,173,434 - +0.2 4,173,434 - -1.1 4,173,468 + +0.3 4,173,469 - +0.9 4,173,837 + -0.1 4,173,837 + -0.3 4,173,837 + -1.6 4,173,837 + +0.7 4,173,837 + +1.5 4,173,837 + -0.1 4,173,855 + +1.2 4,173,871 - -0.2 4,173,871 - +2.7 4,173,871 - +0.4 4,173,871 - -0.3 4,173,871 - +0.6 4,173,871 - +0.4 4,173,871 - -0.5 4,173,871 - -0.9 4,173,871 - -0.5 4,173,871 - +0.7 4,173,871 - +0.3 4,173,871 - +0.8 4,173,871 - -1.0 4,173,871 - +1.0 4,173,871 - -0.6 4,173,876 + -0.9 4,173,906 + -1.7 4,173,906 + +0.8 4,173,906 + -0.3 4,173,906 + +0.7 4,173,906 + +0.9 4,173,906 + -0.6 4,173,907 - -0.3 4,174,141 - Psyr_3502 0.15 -0.3 4,174,184 + Psyr_3502 0.17 -1.1 4,174,184 + Psyr_3502 0.17 -0.2 4,174,218 + Psyr_3502 0.18 -1.1 4,174,218 + Psyr_3502 0.18 +1.2 4,174,218 + Psyr_3502 0.18 -1.7 4,174,218 + Psyr_3502 0.18 -2.6 4,174,219 - Psyr_3502 0.18 +0.6 4,174,219 - Psyr_3502 0.18 +0.2 4,174,219 - Psyr_3502 0.18 +0.2 4,174,219 - Psyr_3502 0.18 -0.2 4,174,219 - Psyr_3502 0.18 -0.6 4,174,219 - Psyr_3502 0.18 -0.4 4,174,219 - Psyr_3502 0.18 +0.9 4,174,219 - Psyr_3502 0.18 +0.5 4,174,498 + Psyr_3502 0.26 +0.5 4,174,498 + Psyr_3502 0.26 -0.5 4,174,498 + Psyr_3502 0.26 -0.3 4,174,498 + Psyr_3502 0.26 -0.1 4,174,498 + Psyr_3502 0.26 -0.8 4,174,499 - Psyr_3502 0.26 +0.0 4,174,499 - Psyr_3502 0.26 -0.1 4,174,499 - Psyr_3502 0.26 -0.5 4,174,569 + Psyr_3502 0.28 -1.0 4,174,570 - Psyr_3502 0.28 +0.7 4,174,591 - Psyr_3502 0.29 -0.8 4,174,668 - Psyr_3502 0.31 +0.8 4,175,408 + Psyr_3502 0.53 +1.3 4,175,468 - Psyr_3502 0.55 +0.7 4,175,520 + Psyr_3502 0.56 -0.8 4,175,626 - Psyr_3502 0.59 -0.7 4,175,789 + Psyr_3502 0.64 -1.5 4,175,789 + Psyr_3502 0.64 -1.6 4,175,793 + Psyr_3502 0.64 -0.1 4,175,794 - Psyr_3502 0.64 -1.2 4,175,804 + Psyr_3502 0.64 -0.0 4,175,804 + Psyr_3502 0.64 -0.3 4,175,851 - Psyr_3502 0.66 +0.1 4,175,851 - Psyr_3502 0.66 -0.1 4,175,864 + Psyr_3502 0.66 -0.9 4,175,864 + Psyr_3502 0.66 -1.9 4,175,864 + Psyr_3502 0.66 -1.2 4,175,864 + Psyr_3502 0.66 -0.3 4,175,864 + Psyr_3502 0.66 +0.5 4,175,864 + Psyr_3502 0.66 -0.3 4,175,865 - Psyr_3502 0.66 -1.3 4,175,865 - Psyr_3502 0.66 -0.0 4,175,865 - Psyr_3502 0.66 +0.4 4,175,865 - Psyr_3502 0.66 +0.5 4,175,870 + Psyr_3502 0.66 -0.6 4,175,871 - Psyr_3502 0.66 -0.8 4,175,875 + Psyr_3502 0.66 +0.7 4,175,953 + Psyr_3502 0.69 -0.7 4,175,953 + Psyr_3502 0.69 -1.8 4,175,953 + Psyr_3502 0.69 -0.6 4,175,954 - Psyr_3502 0.69 -0.3 4,175,954 - Psyr_3502 0.69 +1.6 4,176,029 + Psyr_3502 0.71 +0.3 4,176,029 + Psyr_3502 0.71 -1.3 4,176,074 + Psyr_3502 0.72 -0.6 4,176,074 + Psyr_3502 0.72 -2.3 4,176,139 + Psyr_3502 0.74 +0.1 4,176,140 - Psyr_3502 0.74 -2.0 4,176,254 + Psyr_3502 0.78 +0.1 4,176,272 - Psyr_3502 0.78 -0.7 4,176,297 - Psyr_3502 0.79 +0.9 4,176,376 - Psyr_3502 0.81 -0.1 4,176,474 + Psyr_3502 0.84 -0.6 4,176,490 + Psyr_3502 0.85 +0.6 4,176,490 + Psyr_3502 0.85 -0.6 4,176,491 - Psyr_3502 0.85 +0.6 4,176,491 - Psyr_3502 0.85 -0.1 4,176,491 - Psyr_3502 0.85 +0.2 4,176,491 - Psyr_3502 0.85 +0.0 4,176,507 + Psyr_3502 0.85 -0.3 4,176,508 - Psyr_3502 0.85 -1.5 4,176,508 - Psyr_3502 0.85 -0.2 4,176,538 + Psyr_3502 0.86 -0.3 4,176,563 - Psyr_3502 0.87 -2.3 4,176,619 + Psyr_3502 0.88 -2.1 4,176,619 + Psyr_3502 0.88 -0.3 4,176,619 + Psyr_3502 0.88 -0.8 4,176,626 - Psyr_3502 0.89 -0.6 4,176,703 + -0.8 4,176,704 - -1.7 4,176,744 + -0.8 4,176,744 + +0.3 4,176,744 + -2.3 4,176,816 + -2.3 4,176,816 + -2.4 4,176,816 + -2.4 4,176,816 + -0.7 4,176,816 + -2.4 4,176,816 + -2.1 4,176,816 + -2.5 4,176,816 + -0.1 4,176,817 - -3.0 4,176,817 - +0.7 4,176,817 - -0.1 4,176,817 - -0.1 4,176,817 - +0.3 4,176,817 - -0.6 4,176,817 - -1.4 4,176,817 - -1.2 4,176,817 - +0.4 4,176,817 - -2.4 4,176,817 - +0.4 4,176,819 - -2.2 4,176,883 + -1.0 4,177,010 - -1.3 4,177,120 - +0.4 4,177,134 - +0.3 4,177,134 - -1.7 4,177,137 + +0.3 4,177,155 - -2.1 4,177,212 + -0.3 4,177,212 + +0.3 4,177,216 - -0.2 4,177,274 + Psyr_3503 0.19 +1.1 4,177,274 + Psyr_3503 0.19 +0.3 4,177,274 + Psyr_3503 0.19 +0.6 4,177,275 - Psyr_3503 0.19 +0.3 4,177,275 - Psyr_3503 0.19 -0.8 4,177,275 - Psyr_3503 0.19 -1.8 4,177,275 - Psyr_3503 0.19 -2.8 4,177,280 + Psyr_3503 0.20 +0.1 4,177,280 + Psyr_3503 0.20 +0.7 4,177,280 + Psyr_3503 0.20 +0.1 4,177,313 + Psyr_3503 0.26 -1.7 4,177,314 - Psyr_3503 0.26 -1.8 4,177,380 + Psyr_3503 0.39 +0.4 4,177,380 + Psyr_3503 0.39 -0.3 4,177,558 + Psyr_3503 0.73 -1.8 4,177,625 + Psyr_3503 0.85 +0.4 4,177,625 + Psyr_3503 0.85 +0.2 4,177,626 - Psyr_3503 0.85 +0.5 4,177,626 - Psyr_3503 0.85 +1.2 4,177,667 + +1.2 4,177,667 + +0.7 4,177,667 + +0.7 4,177,667 + -1.3 4,177,667 + -0.2 4,177,667 + +0.6 4,177,667 + +0.6 4,177,668 - -0.3 4,177,668 - +1.4 4,177,668 - -0.3 4,177,668 - -2.1 4,177,853 + -1.8 4,177,853 + -0.5 4,177,853 + +0.2 4,177,853 + +0.5 4,177,853 + -0.5 4,177,853 + +2.3 4,177,853 + +0.2 4,177,853 + +1.4 4,177,853 + +1.5 4,177,854 - +0.7 4,177,854 - +1.2 4,177,854 - +0.3 4,177,854 - +0.2 4,177,854 - +0.1 4,177,854 - -0.8
Or see this region's nucleotide sequence