Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3136

Experiment: KB with Fusaric 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3134 and Psyr_3135 are separated by 49 nucleotidesPsyr_3135 and Psyr_3136 are separated by 113 nucleotidesPsyr_3136 and Psyr_3137 are separated by 16 nucleotides Psyr_3134: Psyr_3134 - General substrate transporter:Major facilitator superfamily, at 3,759,349 to 3,760,635 _3134 Psyr_3135: Psyr_3135 - transcriptional regulator, GntR family, at 3,760,685 to 3,761,428 _3135 Psyr_3136: Psyr_3136 - hypothetical protein, at 3,761,542 to 3,762,162 _3136 Psyr_3137: Psyr_3137 - ATPase, at 3,762,179 to 3,763,528 _3137 Position (kb) 3761 3762 3763Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3760.642 kb on + strandat 3760.704 kb on + strandat 3760.761 kb on + strand, within Psyr_3135at 3760.762 kb on - strand, within Psyr_3135at 3760.828 kb on - strand, within Psyr_3135at 3760.900 kb on - strand, within Psyr_3135at 3761.380 kb on - strandat 3761.438 kb on + strandat 3761.517 kb on + strandat 3761.517 kb on + strandat 3761.518 kb on - strandat 3761.568 kb on + strandat 3761.568 kb on + strandat 3761.677 kb on + strand, within Psyr_3136at 3761.677 kb on + strand, within Psyr_3136at 3761.678 kb on - strand, within Psyr_3136at 3761.741 kb on - strand, within Psyr_3136at 3761.741 kb on - strand, within Psyr_3136at 3761.766 kb on + strand, within Psyr_3136at 3761.767 kb on - strand, within Psyr_3136at 3761.778 kb on + strand, within Psyr_3136at 3761.779 kb on - strand, within Psyr_3136at 3761.790 kb on + strand, within Psyr_3136at 3761.790 kb on + strand, within Psyr_3136at 3761.877 kb on + strand, within Psyr_3136at 3761.878 kb on - strand, within Psyr_3136at 3761.885 kb on - strand, within Psyr_3136at 3761.943 kb on + strand, within Psyr_3136at 3761.943 kb on + strand, within Psyr_3136at 3761.943 kb on + strand, within Psyr_3136at 3761.943 kb on + strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.944 kb on - strand, within Psyr_3136at 3761.991 kb on + strand, within Psyr_3136at 3762.041 kb on + strand, within Psyr_3136at 3762.041 kb on + strand, within Psyr_3136at 3762.076 kb on - strand, within Psyr_3136at 3762.122 kb on + strandat 3762.122 kb on + strandat 3762.123 kb on - strandat 3762.197 kb on + strandat 3762.197 kb on + strandat 3762.198 kb on - strandat 3762.198 kb on - strandat 3762.198 kb on - strandat 3762.254 kb on + strandat 3762.254 kb on + strandat 3762.255 kb on - strandat 3762.255 kb on - strandat 3762.409 kb on - strand, within Psyr_3137at 3762.450 kb on + strand, within Psyr_3137at 3762.450 kb on + strand, within Psyr_3137at 3762.450 kb on + strand, within Psyr_3137at 3762.451 kb on - strand, within Psyr_3137at 3762.451 kb on - strand, within Psyr_3137at 3762.451 kb on - strand, within Psyr_3137at 3762.451 kb on - strand, within Psyr_3137at 3762.451 kb on - strand, within Psyr_3137at 3762.529 kb on + strand, within Psyr_3137at 3762.529 kb on + strand, within Psyr_3137at 3762.529 kb on + strand, within Psyr_3137at 3762.529 kb on + strand, within Psyr_3137at 3762.529 kb on + strand, within Psyr_3137at 3762.529 kb on + strand, within Psyr_3137at 3762.530 kb on - strand, within Psyr_3137at 3762.707 kb on + strand, within Psyr_3137at 3762.708 kb on - strand, within Psyr_3137at 3762.708 kb on - strand, within Psyr_3137at 3762.708 kb on - strand, within Psyr_3137at 3762.708 kb on - strand, within Psyr_3137at 3762.708 kb on - strand, within Psyr_3137at 3762.733 kb on + strand, within Psyr_3137at 3762.734 kb on - strand, within Psyr_3137at 3762.738 kb on - strand, within Psyr_3137at 3762.738 kb on - strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.801 kb on + strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.802 kb on - strand, within Psyr_3137at 3762.860 kb on + strand, within Psyr_3137at 3762.860 kb on + strand, within Psyr_3137at 3762.870 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.875 kb on + strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.876 kb on - strand, within Psyr_3137at 3762.926 kb on + strand, within Psyr_3137at 3762.956 kb on - strand, within Psyr_3137at 3763.089 kb on + strand, within Psyr_3137at 3763.154 kb on + strand, within Psyr_3137at 3763.155 kb on - strand, within Psyr_3137at 3763.155 kb on - strand, within Psyr_3137at 3763.155 kb on - strand, within Psyr_3137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
remove
3,760,642 + -1.4
3,760,704 + +0.4
3,760,761 + Psyr_3135 0.10 +1.8
3,760,762 - Psyr_3135 0.10 +0.2
3,760,828 - Psyr_3135 0.19 +0.6
3,760,900 - Psyr_3135 0.29 -1.5
3,761,380 - +0.1
3,761,438 + +0.9
3,761,517 + +1.6
3,761,517 + -0.6
3,761,518 - +0.3
3,761,568 + -1.4
3,761,568 + -2.4
3,761,677 + Psyr_3136 0.22 -1.1
3,761,677 + Psyr_3136 0.22 -0.9
3,761,678 - Psyr_3136 0.22 +0.6
3,761,741 - Psyr_3136 0.32 -0.3
3,761,741 - Psyr_3136 0.32 -0.5
3,761,766 + Psyr_3136 0.36 +1.1
3,761,767 - Psyr_3136 0.36 -0.7
3,761,778 + Psyr_3136 0.38 +1.1
3,761,779 - Psyr_3136 0.38 -1.2
3,761,790 + Psyr_3136 0.40 +0.3
3,761,790 + Psyr_3136 0.40 -0.5
3,761,877 + Psyr_3136 0.54 -2.4
3,761,878 - Psyr_3136 0.54 +0.3
3,761,885 - Psyr_3136 0.55 +0.8
3,761,943 + Psyr_3136 0.65 -0.6
3,761,943 + Psyr_3136 0.65 -0.7
3,761,943 + Psyr_3136 0.65 -0.5
3,761,943 + Psyr_3136 0.65 -1.6
3,761,944 - Psyr_3136 0.65 +3.2
3,761,944 - Psyr_3136 0.65 -0.8
3,761,944 - Psyr_3136 0.65 +0.2
3,761,944 - Psyr_3136 0.65 -0.5
3,761,944 - Psyr_3136 0.65 +0.6
3,761,944 - Psyr_3136 0.65 -0.4
3,761,944 - Psyr_3136 0.65 -0.5
3,761,991 + Psyr_3136 0.72 +0.0
3,762,041 + Psyr_3136 0.80 -2.2
3,762,041 + Psyr_3136 0.80 +0.6
3,762,076 - Psyr_3136 0.86 +0.9
3,762,122 + -0.9
3,762,122 + -3.4
3,762,123 - -0.4
3,762,197 + -0.5
3,762,197 + +0.2
3,762,198 - +1.0
3,762,198 - +0.2
3,762,198 - +2.6
3,762,254 + -0.4
3,762,254 + +0.5
3,762,255 - +0.8
3,762,255 - +0.1
3,762,409 - Psyr_3137 0.17 -1.4
3,762,450 + Psyr_3137 0.20 -0.7
3,762,450 + Psyr_3137 0.20 +0.1
3,762,450 + Psyr_3137 0.20 -0.7
3,762,451 - Psyr_3137 0.20 -0.8
3,762,451 - Psyr_3137 0.20 -0.5
3,762,451 - Psyr_3137 0.20 -0.5
3,762,451 - Psyr_3137 0.20 +1.6
3,762,451 - Psyr_3137 0.20 +1.2
3,762,529 + Psyr_3137 0.26 +1.2
3,762,529 + Psyr_3137 0.26 -1.7
3,762,529 + Psyr_3137 0.26 +0.6
3,762,529 + Psyr_3137 0.26 -1.4
3,762,529 + Psyr_3137 0.26 -0.7
3,762,529 + Psyr_3137 0.26 +0.1
3,762,530 - Psyr_3137 0.26 +0.3
3,762,707 + Psyr_3137 0.39 -0.9
3,762,708 - Psyr_3137 0.39 +0.0
3,762,708 - Psyr_3137 0.39 -3.3
3,762,708 - Psyr_3137 0.39 -2.5
3,762,708 - Psyr_3137 0.39 +0.6
3,762,708 - Psyr_3137 0.39 -1.4
3,762,733 + Psyr_3137 0.41 -1.4
3,762,734 - Psyr_3137 0.41 -0.2
3,762,738 - Psyr_3137 0.41 -1.4
3,762,738 - Psyr_3137 0.41 -0.4
3,762,801 + Psyr_3137 0.46 +0.3
3,762,801 + Psyr_3137 0.46 -2.3
3,762,801 + Psyr_3137 0.46 +1.0
3,762,801 + Psyr_3137 0.46 -1.3
3,762,801 + Psyr_3137 0.46 +0.9
3,762,801 + Psyr_3137 0.46 -2.2
3,762,801 + Psyr_3137 0.46 -3.2
3,762,801 + Psyr_3137 0.46 -0.9
3,762,802 - Psyr_3137 0.46 +1.2
3,762,802 - Psyr_3137 0.46 +0.6
3,762,802 - Psyr_3137 0.46 +0.1
3,762,802 - Psyr_3137 0.46 -0.2
3,762,802 - Psyr_3137 0.46 +0.3
3,762,802 - Psyr_3137 0.46 +0.6
3,762,860 + Psyr_3137 0.50 -2.2
3,762,860 + Psyr_3137 0.50 -2.7
3,762,870 + Psyr_3137 0.51 -0.9
3,762,875 + Psyr_3137 0.52 -1.1
3,762,875 + Psyr_3137 0.52 -1.4
3,762,875 + Psyr_3137 0.52 -0.9
3,762,875 + Psyr_3137 0.52 -2.4
3,762,875 + Psyr_3137 0.52 -2.2
3,762,875 + Psyr_3137 0.52 -0.7
3,762,876 - Psyr_3137 0.52 -1.7
3,762,876 - Psyr_3137 0.52 -0.9
3,762,876 - Psyr_3137 0.52 -0.7
3,762,876 - Psyr_3137 0.52 -2.2
3,762,876 - Psyr_3137 0.52 -0.1
3,762,876 - Psyr_3137 0.52 -1.4
3,762,926 + Psyr_3137 0.55 -1.4
3,762,956 - Psyr_3137 0.58 -2.4
3,763,089 + Psyr_3137 0.67 -0.6
3,763,154 + Psyr_3137 0.72 -2.4
3,763,155 - Psyr_3137 0.72 +0.1
3,763,155 - Psyr_3137 0.72 -0.2
3,763,155 - Psyr_3137 0.72 +0.4

Or see this region's nucleotide sequence