Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2747 and Psyr_2748 overlap by 4 nucleotides Psyr_2748 and Psyr_2749 are separated by 14 nucleotides
Psyr_2747: Psyr_2747 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 3,335,141 to 3,336,121
_2747
Psyr_2748: Psyr_2748 - FAD dependent oxidoreductase, at 3,336,118 to 3,337,272
_2748
Psyr_2749: Psyr_2749 - Methionine--tRNA ligase, at 3,337,287 to 3,338,786
_2749
Position (kb)
3336
3337
3338 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3335.122 kb on + strand at 3335.142 kb on + strand at 3335.320 kb on - strand, within Psyr_2747 at 3335.320 kb on - strand, within Psyr_2747 at 3335.320 kb on - strand, within Psyr_2747 at 3335.320 kb on - strand, within Psyr_2747 at 3335.346 kb on + strand, within Psyr_2747 at 3335.346 kb on + strand, within Psyr_2747 at 3335.346 kb on + strand, within Psyr_2747 at 3336.308 kb on + strand, within Psyr_2748 at 3336.309 kb on - strand, within Psyr_2748 at 3336.309 kb on - strand, within Psyr_2748 at 3336.309 kb on - strand, within Psyr_2748 at 3336.362 kb on + strand, within Psyr_2748 at 3336.363 kb on - strand, within Psyr_2748 at 3336.363 kb on - strand, within Psyr_2748 at 3336.363 kb on - strand, within Psyr_2748 at 3336.363 kb on - strand, within Psyr_2748 at 3336.363 kb on - strand, within Psyr_2748 at 3336.525 kb on + strand, within Psyr_2748 at 3336.548 kb on + strand, within Psyr_2748 at 3336.549 kb on - strand, within Psyr_2748 at 3336.549 kb on - strand, within Psyr_2748 at 3336.549 kb on - strand, within Psyr_2748 at 3336.951 kb on - strand, within Psyr_2748 at 3337.035 kb on - strand, within Psyr_2748 at 3337.077 kb on - strand, within Psyr_2748 at 3337.112 kb on + strand, within Psyr_2748 at 3337.112 kb on + strand, within Psyr_2748 at 3337.113 kb on - strand, within Psyr_2748 at 3337.113 kb on - strand, within Psyr_2748 at 3337.113 kb on - strand, within Psyr_2748 at 3337.252 kb on + strand at 3337.259 kb on + strand at 3337.267 kb on - strand at 3337.727 kb on - strand, within Psyr_2749 at 3337.727 kb on - strand, within Psyr_2749 at 3337.727 kb on - strand, within Psyr_2749 at 3337.999 kb on + strand, within Psyr_2749 at 3337.999 kb on + strand, within Psyr_2749 at 3338.021 kb on - strand, within Psyr_2749 at 3338.021 kb on - strand, within Psyr_2749
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 3,335,122 + +0.9 3,335,142 + +1.7 3,335,320 - Psyr_2747 0.18 -0.0 3,335,320 - Psyr_2747 0.18 -1.0 3,335,320 - Psyr_2747 0.18 -2.0 3,335,320 - Psyr_2747 0.18 -1.9 3,335,346 + Psyr_2747 0.21 -0.3 3,335,346 + Psyr_2747 0.21 -0.5 3,335,346 + Psyr_2747 0.21 +0.1 3,336,308 + Psyr_2748 0.16 +1.7 3,336,309 - Psyr_2748 0.17 +0.9 3,336,309 - Psyr_2748 0.17 -0.5 3,336,309 - Psyr_2748 0.17 +0.5 3,336,362 + Psyr_2748 0.21 +0.8 3,336,363 - Psyr_2748 0.21 +3.0 3,336,363 - Psyr_2748 0.21 +1.0 3,336,363 - Psyr_2748 0.21 -0.9 3,336,363 - Psyr_2748 0.21 +0.1 3,336,363 - Psyr_2748 0.21 -1.0 3,336,525 + Psyr_2748 0.35 +0.8 3,336,548 + Psyr_2748 0.37 -0.2 3,336,549 - Psyr_2748 0.37 -1.5 3,336,549 - Psyr_2748 0.37 -1.1 3,336,549 - Psyr_2748 0.37 -0.5 3,336,951 - Psyr_2748 0.72 -0.7 3,337,035 - Psyr_2748 0.79 +0.2 3,337,077 - Psyr_2748 0.83 +0.2 3,337,112 + Psyr_2748 0.86 +2.0 3,337,112 + Psyr_2748 0.86 -0.3 3,337,113 - Psyr_2748 0.86 +2.7 3,337,113 - Psyr_2748 0.86 -0.2 3,337,113 - Psyr_2748 0.86 +0.7 3,337,252 + +0.3 3,337,259 + +0.7 3,337,267 - -0.3 3,337,727 - Psyr_2749 0.29 -0.5 3,337,727 - Psyr_2749 0.29 -0.7 3,337,727 - Psyr_2749 0.29 -2.1 3,337,999 + Psyr_2749 0.47 -0.5 3,337,999 + Psyr_2749 0.47 -1.9 3,338,021 - Psyr_2749 0.49 +0.4 3,338,021 - Psyr_2749 0.49 -2.1
Or see this region's nucleotide sequence