Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2174

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2172 and Psyr_2173 are separated by 25 nucleotidesPsyr_2173 and Psyr_2174 are separated by 0 nucleotidesPsyr_2174 and Psyr_2175 are separated by 63 nucleotides Psyr_2172: Psyr_2172 - conserved hypothetical protein, at 2,525,443 to 2,526,288 _2172 Psyr_2173: Psyr_2173 - Electron transfer flavoprotein, alpha subunit, at 2,526,314 to 2,527,243 _2173 Psyr_2174: Psyr_2174 - Electron transfer flavoprotein beta-subunit, at 2,527,244 to 2,527,993 _2174 Psyr_2175: Psyr_2175 - L-carnitine dehydratase/bile acid-inducible protein F, at 2,528,057 to 2,529,280 _2175 Position (kb) 2527 2528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2526.288 kb on + strandat 2526.288 kb on + strandat 2526.288 kb on + strandat 2526.288 kb on + strandat 2526.470 kb on - strand, within Psyr_2173at 2526.483 kb on + strand, within Psyr_2173at 2526.483 kb on + strand, within Psyr_2173at 2526.483 kb on + strand, within Psyr_2173at 2526.483 kb on + strand, within Psyr_2173at 2526.483 kb on + strand, within Psyr_2173at 2526.483 kb on + strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.484 kb on - strand, within Psyr_2173at 2526.841 kb on + strand, within Psyr_2173at 2526.841 kb on + strand, within Psyr_2173at 2526.862 kb on - strand, within Psyr_2173at 2526.862 kb on - strand, within Psyr_2173at 2526.993 kb on + strand, within Psyr_2173at 2527.014 kb on - strand, within Psyr_2173at 2527.246 kb on - strandat 2527.251 kb on - strandat 2527.251 kb on - strandat 2527.441 kb on - strand, within Psyr_2174at 2527.956 kb on + strandat 2527.956 kb on + strandat 2527.956 kb on + strandat 2527.956 kb on + strandat 2528.058 kb on + strandat 2528.098 kb on + strandat 2528.141 kb on + strandat 2528.161 kb on + strandat 2528.161 kb on + strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.162 kb on - strandat 2528.196 kb on - strand, within Psyr_2175at 2528.196 kb on - strand, within Psyr_2175at 2528.302 kb on + strand, within Psyr_2175at 2528.449 kb on + strand, within Psyr_2175at 2528.450 kb on - strand, within Psyr_2175at 2528.456 kb on + strand, within Psyr_2175at 2528.456 kb on + strand, within Psyr_2175at 2528.456 kb on + strand, within Psyr_2175at 2528.457 kb on - strand, within Psyr_2175at 2528.598 kb on + strand, within Psyr_2175at 2528.604 kb on + strand, within Psyr_2175at 2528.605 kb on - strand, within Psyr_2175at 2528.605 kb on - strand, within Psyr_2175at 2528.607 kb on + strand, within Psyr_2175at 2528.607 kb on + strand, within Psyr_2175at 2528.607 kb on + strand, within Psyr_2175at 2528.607 kb on + strand, within Psyr_2175at 2528.608 kb on - strand, within Psyr_2175at 2528.608 kb on - strand, within Psyr_2175at 2528.608 kb on - strand, within Psyr_2175at 2528.608 kb on - strand, within Psyr_2175at 2528.715 kb on + strand, within Psyr_2175at 2528.716 kb on - strand, within Psyr_2175at 2528.716 kb on - strand, within Psyr_2175at 2528.721 kb on + strand, within Psyr_2175at 2528.721 kb on + strand, within Psyr_2175at 2528.721 kb on + strand, within Psyr_2175at 2528.721 kb on + strand, within Psyr_2175at 2528.721 kb on + strand, within Psyr_2175at 2528.722 kb on - strand, within Psyr_2175at 2528.722 kb on - strand, within Psyr_2175at 2528.722 kb on - strand, within Psyr_2175at 2528.722 kb on - strand, within Psyr_2175at 2528.832 kb on + strand, within Psyr_2175

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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2,526,288 + -1.1
2,526,288 + -1.6
2,526,288 + +1.3
2,526,288 + +1.2
2,526,470 - Psyr_2173 0.17 -1.1
2,526,483 + Psyr_2173 0.18 +0.7
2,526,483 + Psyr_2173 0.18 -1.9
2,526,483 + Psyr_2173 0.18 -1.2
2,526,483 + Psyr_2173 0.18 +0.6
2,526,483 + Psyr_2173 0.18 -0.5
2,526,483 + Psyr_2173 0.18 +0.7
2,526,484 - Psyr_2173 0.18 -0.3
2,526,484 - Psyr_2173 0.18 -0.5
2,526,484 - Psyr_2173 0.18 +0.7
2,526,484 - Psyr_2173 0.18 -1.0
2,526,484 - Psyr_2173 0.18 -1.6
2,526,484 - Psyr_2173 0.18 +0.4
2,526,484 - Psyr_2173 0.18 +1.9
2,526,841 + Psyr_2173 0.57 +0.5
2,526,841 + Psyr_2173 0.57 +0.1
2,526,862 - Psyr_2173 0.59 +0.1
2,526,862 - Psyr_2173 0.59 -0.5
2,526,993 + Psyr_2173 0.73 -0.3
2,527,014 - Psyr_2173 0.75 +0.0
2,527,246 - +0.9
2,527,251 - -0.6
2,527,251 - +0.1
2,527,441 - Psyr_2174 0.26 +1.7
2,527,956 + -0.5
2,527,956 + -1.8
2,527,956 + +0.9
2,527,956 + +0.7
2,528,058 + -0.0
2,528,098 + -1.1
2,528,141 + +0.3
2,528,161 + -0.8
2,528,161 + +0.7
2,528,162 - +0.3
2,528,162 - -0.6
2,528,162 - +0.1
2,528,162 - -0.3
2,528,162 - +0.5
2,528,162 - -0.5
2,528,162 - -1.3
2,528,162 - +0.5
2,528,196 - Psyr_2175 0.11 -1.0
2,528,196 - Psyr_2175 0.11 +0.4
2,528,302 + Psyr_2175 0.20 +0.9
2,528,449 + Psyr_2175 0.32 +0.7
2,528,450 - Psyr_2175 0.32 -1.9
2,528,456 + Psyr_2175 0.33 +0.3
2,528,456 + Psyr_2175 0.33 +1.3
2,528,456 + Psyr_2175 0.33 -1.1
2,528,457 - Psyr_2175 0.33 -0.6
2,528,598 + Psyr_2175 0.44 +0.0
2,528,604 + Psyr_2175 0.45 -3.7
2,528,605 - Psyr_2175 0.45 -0.1
2,528,605 - Psyr_2175 0.45 +2.3
2,528,607 + Psyr_2175 0.45 +1.2
2,528,607 + Psyr_2175 0.45 -1.8
2,528,607 + Psyr_2175 0.45 +0.7
2,528,607 + Psyr_2175 0.45 +1.7
2,528,608 - Psyr_2175 0.45 -0.3
2,528,608 - Psyr_2175 0.45 -0.2
2,528,608 - Psyr_2175 0.45 +1.7
2,528,608 - Psyr_2175 0.45 -2.6
2,528,715 + Psyr_2175 0.54 -0.9
2,528,716 - Psyr_2175 0.54 -0.1
2,528,716 - Psyr_2175 0.54 -0.2
2,528,721 + Psyr_2175 0.54 -0.3
2,528,721 + Psyr_2175 0.54 -0.5
2,528,721 + Psyr_2175 0.54 -3.3
2,528,721 + Psyr_2175 0.54 +0.7
2,528,721 + Psyr_2175 0.54 -0.6
2,528,722 - Psyr_2175 0.54 +0.1
2,528,722 - Psyr_2175 0.54 -0.9
2,528,722 - Psyr_2175 0.54 -1.0
2,528,722 - Psyr_2175 0.54 -0.6
2,528,832 + Psyr_2175 0.63 -0.0

Or see this region's nucleotide sequence