Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1846

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1844 and Psyr_1845 are separated by 85 nucleotidesPsyr_1845 and Psyr_1846 are separated by 272 nucleotidesPsyr_1846 and Psyr_1847 are separated by 747 nucleotides Psyr_1844: Psyr_1844 - conserved hypothetical protein, at 2,123,525 to 2,123,890 _1844 Psyr_1845: Psyr_1845 - GTP cyclohydrolase I, at 2,123,976 to 2,124,521 _1845 Psyr_1846: Psyr_1846 - hypothetical protein, at 2,124,794 to 2,125,192 _1846 Psyr_1847: Psyr_1847 - Smr protein/MutS2 C-terminal, at 2,125,940 to 2,126,497 _1847 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -2 -1 0 1 2at 2123.902 kb on + strandat 2123.903 kb on - strandat 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.202 kb on + strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.203 kb on - strand, within Psyr_1845at 2124.260 kb on - strand, within Psyr_1845at 2124.260 kb on - strand, within Psyr_1845at 2124.415 kb on + strand, within Psyr_1845at 2124.415 kb on + strand, within Psyr_1845at 2124.416 kb on - strand, within Psyr_1845at 2124.416 kb on - strand, within Psyr_1845at 2124.502 kb on + strandat 2124.502 kb on + strandat 2124.502 kb on + strandat 2124.502 kb on + strandat 2124.502 kb on + strandat 2124.538 kb on + strandat 2124.539 kb on - strandat 2124.553 kb on + strandat 2124.579 kb on - strandat 2124.639 kb on + strandat 2124.639 kb on + strandat 2124.643 kb on + strandat 2124.644 kb on - strandat 2124.644 kb on - strandat 2124.707 kb on - strandat 2124.711 kb on + strandat 2124.711 kb on + strandat 2124.712 kb on - strandat 2124.729 kb on + strandat 2124.729 kb on + strandat 2124.729 kb on + strandat 2124.745 kb on + strandat 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.907 kb on + strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2124.908 kb on - strand, within Psyr_1846at 2125.000 kb on - strand, within Psyr_1846at 2125.105 kb on + strand, within Psyr_1846at 2125.105 kb on + strand, within Psyr_1846at 2125.106 kb on - strand, within Psyr_1846at 2125.106 kb on - strand, within Psyr_1846at 2125.130 kb on + strand, within Psyr_1846at 2125.164 kb on + strandat 2125.167 kb on + strandat 2125.167 kb on + strandat 2125.167 kb on + strandat 2125.171 kb on + strandat 2125.172 kb on - strandat 2125.172 kb on - strandat 2125.268 kb on + strandat 2125.268 kb on + strandat 2125.268 kb on + strandat 2125.268 kb on + strandat 2125.268 kb on + strandat 2125.269 kb on - strandat 2125.269 kb on - strandat 2125.269 kb on - strandat 2125.269 kb on - strandat 2125.272 kb on + strandat 2125.272 kb on + strandat 2125.272 kb on + strandat 2125.272 kb on + strandat 2125.272 kb on + strandat 2125.273 kb on - strandat 2125.273 kb on - strandat 2125.310 kb on + strandat 2125.310 kb on + strandat 2125.311 kb on - strandat 2125.311 kb on - strandat 2125.311 kb on - strandat 2125.311 kb on - strandat 2125.432 kb on + strandat 2125.433 kb on - strandat 2125.490 kb on - strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.493 kb on + strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.494 kb on - strandat 2125.507 kb on + strandat 2125.508 kb on - strandat 2125.603 kb on - strandat 2125.614 kb on + strandat 2125.615 kb on - strandat 2125.703 kb on - strandat 2125.751 kb on + strandat 2125.751 kb on + strandat 2125.751 kb on + strandat 2125.751 kb on + strandat 2125.751 kb on + strandat 2125.751 kb on + strandat 2125.752 kb on - strandat 2125.752 kb on - strandat 2125.941 kb on + strandat 2125.983 kb on + strandat 2125.983 kb on + strandat 2125.984 kb on - strandat 2125.984 kb on - strandat 2126.135 kb on + strand, within Psyr_1847at 2126.135 kb on + strand, within Psyr_1847

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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2,123,902 + -0.7
2,123,903 - -0.3
2,124,202 + Psyr_1845 0.41 +0.4
2,124,202 + Psyr_1845 0.41 -2.0
2,124,202 + Psyr_1845 0.41 -0.7
2,124,202 + Psyr_1845 0.41 -0.7
2,124,202 + Psyr_1845 0.41 +0.2
2,124,202 + Psyr_1845 0.41 -0.3
2,124,202 + Psyr_1845 0.41 +0.7
2,124,202 + Psyr_1845 0.41 -0.3
2,124,202 + Psyr_1845 0.41 -1.0
2,124,202 + Psyr_1845 0.41 -0.3
2,124,203 - Psyr_1845 0.42 +0.2
2,124,203 - Psyr_1845 0.42 +2.3
2,124,203 - Psyr_1845 0.42 -0.7
2,124,203 - Psyr_1845 0.42 -0.6
2,124,203 - Psyr_1845 0.42 -0.3
2,124,203 - Psyr_1845 0.42 +0.7
2,124,203 - Psyr_1845 0.42 +1.0
2,124,203 - Psyr_1845 0.42 -0.1
2,124,260 - Psyr_1845 0.52 +1.3
2,124,260 - Psyr_1845 0.52 +1.2
2,124,415 + Psyr_1845 0.80 +0.6
2,124,415 + Psyr_1845 0.80 -0.7
2,124,416 - Psyr_1845 0.81 -0.0
2,124,416 - Psyr_1845 0.81 +0.4
2,124,502 + +1.3
2,124,502 + +0.4
2,124,502 + +0.3
2,124,502 + -1.1
2,124,502 + -0.9
2,124,538 + -1.6
2,124,539 - +1.1
2,124,553 + +0.0
2,124,579 - +0.1
2,124,639 + +1.6
2,124,639 + -1.5
2,124,643 + +0.2
2,124,644 - +0.3
2,124,644 - +1.7
2,124,707 - -0.2
2,124,711 + -0.3
2,124,711 + -0.2
2,124,712 - -1.0
2,124,729 + -0.3
2,124,729 + -0.3
2,124,729 + +0.5
2,124,745 + +0.9
2,124,907 + Psyr_1846 0.28 +0.4
2,124,907 + Psyr_1846 0.28 -0.3
2,124,907 + Psyr_1846 0.28 -0.9
2,124,907 + Psyr_1846 0.28 -0.4
2,124,907 + Psyr_1846 0.28 +1.6
2,124,907 + Psyr_1846 0.28 +0.5
2,124,907 + Psyr_1846 0.28 -0.3
2,124,907 + Psyr_1846 0.28 -0.4
2,124,908 - Psyr_1846 0.29 +1.6
2,124,908 - Psyr_1846 0.29 -0.2
2,124,908 - Psyr_1846 0.29 -0.3
2,124,908 - Psyr_1846 0.29 -1.0
2,124,908 - Psyr_1846 0.29 -0.9
2,124,908 - Psyr_1846 0.29 +0.7
2,124,908 - Psyr_1846 0.29 -1.3
2,124,908 - Psyr_1846 0.29 -1.1
2,124,908 - Psyr_1846 0.29 -1.8
2,125,000 - Psyr_1846 0.52 -1.0
2,125,105 + Psyr_1846 0.78 -0.3
2,125,105 + Psyr_1846 0.78 -1.4
2,125,106 - Psyr_1846 0.78 -0.3
2,125,106 - Psyr_1846 0.78 -1.7
2,125,130 + Psyr_1846 0.84 -0.3
2,125,164 + +0.7
2,125,167 + +0.1
2,125,167 + -0.6
2,125,167 + -0.8
2,125,171 + -2.3
2,125,172 - -0.1
2,125,172 - +0.2
2,125,268 + -1.6
2,125,268 + +0.0
2,125,268 + +2.3
2,125,268 + +0.4
2,125,268 + -0.8
2,125,269 - -0.8
2,125,269 - -2.3
2,125,269 - -1.0
2,125,269 - -0.1
2,125,272 + +0.0
2,125,272 + +0.3
2,125,272 + +0.1
2,125,272 + -0.3
2,125,272 + -2.3
2,125,273 - -0.7
2,125,273 - +2.3
2,125,310 + -0.3
2,125,310 + -0.2
2,125,311 - -1.2
2,125,311 - -1.4
2,125,311 - -1.8
2,125,311 - -2.3
2,125,432 + +1.5
2,125,433 - -0.1
2,125,490 - -0.2
2,125,493 + -0.5
2,125,493 + +1.3
2,125,493 + +0.1
2,125,493 + -1.3
2,125,493 + -0.1
2,125,493 + +0.2
2,125,493 + +1.2
2,125,493 + +0.5
2,125,493 + +1.2
2,125,493 + +1.7
2,125,493 + -0.4
2,125,494 - +0.4
2,125,494 - +0.0
2,125,494 - +0.6
2,125,494 - +0.1
2,125,494 - +0.2
2,125,494 - +0.3
2,125,494 - +0.4
2,125,494 - +0.7
2,125,494 - -0.3
2,125,494 - +0.7
2,125,494 - +0.3
2,125,494 - -0.4
2,125,494 - -1.8
2,125,494 - +0.4
2,125,494 - -0.6
2,125,494 - -1.6
2,125,494 - -1.0
2,125,507 + -0.8
2,125,508 - -0.3
2,125,603 - +0.7
2,125,614 + +0.8
2,125,615 - +0.2
2,125,703 - -0.2
2,125,751 + +0.4
2,125,751 + -0.8
2,125,751 + +1.0
2,125,751 + +0.3
2,125,751 + -0.6
2,125,751 + +1.9
2,125,752 - -0.4
2,125,752 - +1.8
2,125,941 + -0.8
2,125,983 + +0.1
2,125,983 + -1.8
2,125,984 - +1.2
2,125,984 - -1.0
2,126,135 + Psyr_1847 0.35 -2.6
2,126,135 + Psyr_1847 0.35 +1.3

Or see this region's nucleotide sequence