Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1808

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1807 and Psyr_1808 are separated by 41 nucleotidesPsyr_1808 and Psyr_1809 overlap by 4 nucleotides Psyr_1807: Psyr_1807 - Allantoicase, at 2,080,620 to 2,081,615 _1807 Psyr_1808: Psyr_1808 - conserved hypothetical protein, at 2,081,657 to 2,082,172 _1808 Psyr_1809: Psyr_1809 - Polysaccharide deacetylase, at 2,082,169 to 2,083,098 _1809 Position (kb) 2081 2082 2083Strain fitness (log2 ratio) -2 -1 0 1at 2080.675 kb on - strandat 2080.859 kb on + strand, within Psyr_1807at 2080.860 kb on - strand, within Psyr_1807at 2080.860 kb on - strand, within Psyr_1807at 2080.860 kb on - strand, within Psyr_1807at 2080.860 kb on - strand, within Psyr_1807at 2080.860 kb on - strand, within Psyr_1807at 2081.162 kb on - strand, within Psyr_1807at 2081.767 kb on + strand, within Psyr_1808at 2081.767 kb on + strand, within Psyr_1808at 2081.767 kb on + strand, within Psyr_1808at 2081.767 kb on + strand, within Psyr_1808at 2081.767 kb on + strand, within Psyr_1808at 2081.768 kb on - strand, within Psyr_1808at 2081.823 kb on + strand, within Psyr_1808at 2081.823 kb on + strand, within Psyr_1808at 2081.824 kb on - strand, within Psyr_1808at 2081.824 kb on - strand, within Psyr_1808at 2081.824 kb on - strand, within Psyr_1808at 2081.824 kb on - strandat 2081.824 kb on - strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.099 kb on + strand, within Psyr_1808at 2082.100 kb on - strand, within Psyr_1808at 2082.100 kb on - strand, within Psyr_1808at 2082.100 kb on - strand, within Psyr_1808at 2082.100 kb on - strand, within Psyr_1808at 2082.100 kb on - strand, within Psyr_1808at 2082.100 kb on - strand, within Psyr_1808at 2082.368 kb on + strand, within Psyr_1809at 2082.396 kb on - strand, within Psyr_1809at 2082.533 kb on + strand, within Psyr_1809at 2082.533 kb on + strand, within Psyr_1809at 2082.533 kb on + strand, within Psyr_1809at 2082.534 kb on - strand, within Psyr_1809at 2082.534 kb on - strand, within Psyr_1809at 2082.534 kb on - strand, within Psyr_1809at 2082.701 kb on + strand, within Psyr_1809at 2083.139 kb on + strandat 2083.139 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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2,080,675 - -0.4
2,080,859 + Psyr_1807 0.24 -1.3
2,080,860 - Psyr_1807 0.24 -0.3
2,080,860 - Psyr_1807 0.24 +0.7
2,080,860 - Psyr_1807 0.24 +0.5
2,080,860 - Psyr_1807 0.24 +0.5
2,080,860 - Psyr_1807 0.24 +0.0
2,081,162 - Psyr_1807 0.54 -0.6
2,081,767 + Psyr_1808 0.21 +1.3
2,081,767 + Psyr_1808 0.21 +0.7
2,081,767 + Psyr_1808 0.21 +1.0
2,081,767 + Psyr_1808 0.21 +0.1
2,081,767 + Psyr_1808 0.21 +1.4
2,081,768 - Psyr_1808 0.22 +1.0
2,081,823 + Psyr_1808 0.32 +0.6
2,081,823 + Psyr_1808 0.32 +1.4
2,081,824 - Psyr_1808 0.32 +0.3
2,081,824 - Psyr_1808 0.32 -1.2
2,081,824 - Psyr_1808 0.32 +0.9
2,081,824 - +0.2
2,081,824 - Psyr_1808 0.32 +1.2
2,082,099 + Psyr_1808 0.86 +0.1
2,082,099 + Psyr_1808 0.86 +0.4
2,082,099 + Psyr_1808 0.86 +1.2
2,082,099 + Psyr_1808 0.86 -0.8
2,082,099 + Psyr_1808 0.86 +0.4
2,082,099 + Psyr_1808 0.86 +0.3
2,082,099 + Psyr_1808 0.86 -0.7
2,082,100 - Psyr_1808 0.86 +0.9
2,082,100 - Psyr_1808 0.86 +0.4
2,082,100 - Psyr_1808 0.86 -0.3
2,082,100 - Psyr_1808 0.86 -0.8
2,082,100 - Psyr_1808 0.86 +0.4
2,082,100 - Psyr_1808 0.86 -0.6
2,082,368 + Psyr_1809 0.21 -0.4
2,082,396 - Psyr_1809 0.24 +0.3
2,082,533 + Psyr_1809 0.39 +0.4
2,082,533 + Psyr_1809 0.39 +0.1
2,082,533 + Psyr_1809 0.39 -1.8
2,082,534 - Psyr_1809 0.39 +0.2
2,082,534 - Psyr_1809 0.39 +1.4
2,082,534 - Psyr_1809 0.39 -1.2
2,082,701 + Psyr_1809 0.57 -0.3
2,083,139 + -0.7
2,083,139 + +1.1

Or see this region's nucleotide sequence