Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1692

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1690 and Psyr_1691 are separated by 182 nucleotidesPsyr_1691 and Psyr_1692 are separated by 12 nucleotidesPsyr_1692 and Psyr_1693 are separated by 26 nucleotidesPsyr_1693 and Psyr_1694 are separated by 30 nucleotides Psyr_1690: Psyr_1690 - Peptidase M1, membrane alanine aminopeptidase, at 1,897,741 to 1,900,407 _1690 Psyr_1691: Psyr_1691 - hypothetical protein, at 1,900,590 to 1,900,832 _1691 Psyr_1692: Psyr_1692 - conserved hypothetical protein, at 1,900,845 to 1,901,498 _1692 Psyr_1693: Psyr_1693 - PspA/IM30, at 1,901,525 to 1,902,232 _1693 Psyr_1694: Psyr_1694 - Rhomboid-like protein, at 1,902,263 to 1,902,817 _1694 Position (kb) 1900 1901 1902Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1900.375 kb on + strandat 1900.375 kb on + strandat 1900.376 kb on - strandat 1900.376 kb on - strandat 1900.376 kb on - strandat 1900.584 kb on + strandat 1900.585 kb on - strandat 1900.628 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.712 kb on + strand, within Psyr_1691at 1900.713 kb on - strand, within Psyr_1691at 1900.734 kb on + strand, within Psyr_1691at 1900.734 kb on + strand, within Psyr_1691at 1900.777 kb on + strand, within Psyr_1691at 1900.777 kb on + strand, within Psyr_1691at 1900.781 kb on + strand, within Psyr_1691at 1900.800 kb on + strand, within Psyr_1691at 1900.800 kb on + strand, within Psyr_1691at 1900.800 kb on + strand, within Psyr_1691at 1900.801 kb on - strand, within Psyr_1691at 1900.801 kb on - strand, within Psyr_1691at 1900.801 kb on - strand, within Psyr_1691at 1900.809 kb on + strandat 1900.809 kb on + strandat 1900.810 kb on - strandat 1900.854 kb on - strandat 1900.854 kb on - strandat 1900.911 kb on + strand, within Psyr_1692at 1900.911 kb on + strand, within Psyr_1692at 1900.911 kb on + strand, within Psyr_1692at 1900.911 kb on + strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1900.912 kb on - strand, within Psyr_1692at 1901.045 kb on - strand, within Psyr_1692at 1901.045 kb on - strand, within Psyr_1692at 1901.073 kb on - strand, within Psyr_1692at 1901.196 kb on + strand, within Psyr_1692at 1901.214 kb on + strand, within Psyr_1692at 1901.214 kb on + strand, within Psyr_1692at 1901.215 kb on - strand, within Psyr_1692at 1901.215 kb on - strand, within Psyr_1692at 1901.224 kb on + strand, within Psyr_1692at 1901.225 kb on - strand, within Psyr_1692at 1901.494 kb on - strandat 1901.494 kb on - strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on - strandat 1901.531 kb on - strandat 1901.531 kb on - strandat 1901.531 kb on - strandat 1901.536 kb on + strandat 1901.536 kb on + strandat 1901.536 kb on + strandat 1901.537 kb on - strandat 1901.799 kb on + strand, within Psyr_1693at 1901.995 kb on + strand, within Psyr_1693at 1902.190 kb on - strandat 1902.190 kb on - strandat 1902.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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1,900,375 + -1.6
1,900,375 + -0.1
1,900,376 - +0.4
1,900,376 - -1.6
1,900,376 - +0.1
1,900,584 + +0.2
1,900,585 - -0.9
1,900,628 + Psyr_1691 0.16 -0.4
1,900,712 + Psyr_1691 0.50 +0.0
1,900,712 + Psyr_1691 0.50 +0.6
1,900,712 + Psyr_1691 0.50 +0.2
1,900,712 + Psyr_1691 0.50 +0.1
1,900,712 + Psyr_1691 0.50 +0.5
1,900,713 - Psyr_1691 0.51 +2.7
1,900,734 + Psyr_1691 0.59 +0.3
1,900,734 + Psyr_1691 0.59 +0.7
1,900,777 + Psyr_1691 0.77 +2.3
1,900,777 + Psyr_1691 0.77 -1.5
1,900,781 + Psyr_1691 0.79 +0.0
1,900,800 + Psyr_1691 0.86 -0.1
1,900,800 + Psyr_1691 0.86 +0.4
1,900,800 + Psyr_1691 0.86 -0.4
1,900,801 - Psyr_1691 0.87 -0.5
1,900,801 - Psyr_1691 0.87 -0.1
1,900,801 - Psyr_1691 0.87 +0.1
1,900,809 + +0.5
1,900,809 + -0.2
1,900,810 - -1.3
1,900,854 - +0.1
1,900,854 - +0.7
1,900,911 + Psyr_1692 0.10 -0.5
1,900,911 + Psyr_1692 0.10 +0.7
1,900,911 + Psyr_1692 0.10 +0.7
1,900,911 + Psyr_1692 0.10 -0.0
1,900,912 - Psyr_1692 0.10 -1.1
1,900,912 - Psyr_1692 0.10 -2.1
1,900,912 - Psyr_1692 0.10 -1.0
1,900,912 - Psyr_1692 0.10 +2.1
1,901,045 - Psyr_1692 0.31 -0.3
1,901,045 - Psyr_1692 0.31 -0.5
1,901,073 - Psyr_1692 0.35 -0.7
1,901,196 + Psyr_1692 0.54 -1.1
1,901,214 + Psyr_1692 0.56 +1.3
1,901,214 + Psyr_1692 0.56 +0.2
1,901,215 - Psyr_1692 0.57 -1.6
1,901,215 - Psyr_1692 0.57 -0.3
1,901,224 + Psyr_1692 0.58 -0.3
1,901,225 - Psyr_1692 0.58 -0.9
1,901,494 - -0.7
1,901,494 - -0.5
1,901,530 + +0.7
1,901,530 + +0.3
1,901,530 + +0.4
1,901,530 + +0.9
1,901,530 + -0.8
1,901,530 + -1.5
1,901,530 - +0.3
1,901,531 - -0.6
1,901,531 - +0.0
1,901,531 - -0.3
1,901,536 + -1.3
1,901,536 + +0.6
1,901,536 + -0.4
1,901,537 - -0.9
1,901,799 + Psyr_1693 0.39 +0.7
1,901,995 + Psyr_1693 0.66 +1.4
1,902,190 - -3.2
1,902,190 - -0.8
1,902,190 - +0.7

Or see this region's nucleotide sequence