Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1555

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1554 and Psyr_1555 are separated by 937 nucleotidesPsyr_1555 and Psyr_1556 are separated by 373 nucleotides Psyr_1554: Psyr_1554 - hypothetical protein, at 1,746,859 to 1,747,890 _1554 Psyr_1555: Psyr_1555 - Cobyrinic acid a,c-diamide synthase, at 1,748,828 to 1,749,769 _1555 Psyr_1556: Psyr_1556 - hypothetical protein, at 1,750,143 to 1,750,403 _1556 Position (kb) 1748 1749 1750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.849 kb on + strandat 1747.850 kb on - strandat 1747.850 kb on - strandat 1747.893 kb on - strandat 1747.907 kb on + strandat 1747.907 kb on + strandat 1747.912 kb on + strandat 1747.913 kb on - strandat 1747.913 kb on - strandat 1747.937 kb on + strandat 1747.938 kb on - strandat 1747.993 kb on - strandat 1748.080 kb on - strandat 1748.166 kb on + strandat 1748.166 kb on + strandat 1748.167 kb on - strandat 1748.167 kb on - strandat 1748.167 kb on - strandat 1748.200 kb on + strandat 1748.200 kb on + strandat 1748.367 kb on + strandat 1748.401 kb on - strandat 1748.871 kb on + strandat 1749.064 kb on - strand, within Psyr_1555at 1749.112 kb on - strand, within Psyr_1555at 1749.150 kb on + strand, within Psyr_1555at 1749.234 kb on + strand, within Psyr_1555at 1749.234 kb on + strand, within Psyr_1555at 1749.234 kb on + strand, within Psyr_1555at 1749.234 kb on + strand, within Psyr_1555at 1749.235 kb on - strand, within Psyr_1555at 1749.276 kb on - strand, within Psyr_1555at 1749.433 kb on + strand, within Psyr_1555at 1749.456 kb on - strand, within Psyr_1555at 1749.493 kb on + strand, within Psyr_1555at 1749.494 kb on - strand, within Psyr_1555at 1749.598 kb on + strand, within Psyr_1555at 1749.604 kb on - strandat 1749.604 kb on - strand, within Psyr_1555at 1749.633 kb on - strand, within Psyr_1555at 1749.690 kb on - strandat 1749.701 kb on + strandat 1749.701 kb on + strandat 1749.769 kb on + strandat 1749.769 kb on + strandat 1749.770 kb on - strandat 1749.770 kb on - strandat 1749.773 kb on + strandat 1749.773 kb on + strandat 1749.780 kb on - strandat 1749.797 kb on + strandat 1749.815 kb on - strandat 1749.879 kb on + strandat 1749.950 kb on + strandat 1749.973 kb on + strandat 1750.296 kb on - strand, within Psyr_1556at 1750.307 kb on + strand, within Psyr_1556at 1750.307 kb on + strand, within Psyr_1556at 1750.311 kb on + strand, within Psyr_1556at 1750.361 kb on + strand, within Psyr_1556at 1750.376 kb on + strand, within Psyr_1556at 1750.419 kb on + strandat 1750.446 kb on + strandat 1750.530 kb on + strandat 1750.530 kb on + strandat 1750.649 kb on + strandat 1750.649 kb on + strandat 1750.684 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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1,747,849 + -1.2
1,747,849 + -0.2
1,747,849 + -0.1
1,747,849 + -0.2
1,747,849 + -1.8
1,747,849 + -1.8
1,747,849 + -1.4
1,747,849 + -0.6
1,747,850 - -0.2
1,747,850 - -0.8
1,747,893 - +0.3
1,747,907 + -2.5
1,747,907 + -1.1
1,747,912 + -0.6
1,747,913 - -1.0
1,747,913 - -0.2
1,747,937 + -0.1
1,747,938 - -1.5
1,747,993 - -0.6
1,748,080 - +0.1
1,748,166 + +0.2
1,748,166 + -0.5
1,748,167 - -0.5
1,748,167 - -0.8
1,748,167 - -0.2
1,748,200 + -0.3
1,748,200 + +0.2
1,748,367 + -0.5
1,748,401 - +0.6
1,748,871 + -1.5
1,749,064 - Psyr_1555 0.25 +3.2
1,749,112 - Psyr_1555 0.30 -0.8
1,749,150 + Psyr_1555 0.34 +2.4
1,749,234 + Psyr_1555 0.43 -2.4
1,749,234 + Psyr_1555 0.43 -1.2
1,749,234 + Psyr_1555 0.43 -2.5
1,749,234 + Psyr_1555 0.43 -1.9
1,749,235 - Psyr_1555 0.43 -2.8
1,749,276 - Psyr_1555 0.48 -2.1
1,749,433 + Psyr_1555 0.64 -2.7
1,749,456 - Psyr_1555 0.67 +2.8
1,749,493 + Psyr_1555 0.71 -2.0
1,749,494 - Psyr_1555 0.71 -0.5
1,749,598 + Psyr_1555 0.82 -3.2
1,749,604 - +0.2
1,749,604 - Psyr_1555 0.82 -2.9
1,749,633 - Psyr_1555 0.85 -1.7
1,749,690 - -1.0
1,749,701 + +0.8
1,749,701 + -1.3
1,749,769 + -3.2
1,749,769 + -3.0
1,749,770 - +0.2
1,749,770 - -2.4
1,749,773 + +0.4
1,749,773 + -0.9
1,749,780 - -1.8
1,749,797 + +0.8
1,749,815 - +0.1
1,749,879 + -3.0
1,749,950 + -0.5
1,749,973 + -0.4
1,750,296 - Psyr_1556 0.59 -0.9
1,750,307 + Psyr_1556 0.63 -1.4
1,750,307 + Psyr_1556 0.63 -1.5
1,750,311 + Psyr_1556 0.64 +2.4
1,750,361 + Psyr_1556 0.84 -2.4
1,750,376 + Psyr_1556 0.89 -1.0
1,750,419 + -1.0
1,750,446 + -0.4
1,750,530 + -1.5
1,750,530 + -2.8
1,750,649 + -1.8
1,750,649 + -2.8
1,750,684 - -0.9

Or see this region's nucleotide sequence