Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0832 and Psyr_0833 overlap by 17 nucleotides Psyr_0833 and Psyr_0834 are separated by 98 nucleotides
Psyr_0832: Psyr_0832 - Two-component sensor kinase CbrA, at 942,776 to 945,730
_0832
Psyr_0833: Psyr_0833 - conserved hypothetical protein, at 945,714 to 945,890
_0833
Psyr_0834: Psyr_0834 - Glutamyl-tRNA synthetase, class Ic, at 945,989 to 946,876
_0834
Position (kb) 945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 944.751 kb on + strand, within Psyr_0832 at 944.808 kb on + strand, within Psyr_0832 at 944.808 kb on + strand, within Psyr_0832 at 944.955 kb on + strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 945.105 kb on + strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.115 kb on - strand, within Psyr_0832 at 945.435 kb on + strand at 945.436 kb on - strand at 945.508 kb on - strand at 945.601 kb on - strand at 945.601 kb on - strand at 945.601 kb on - strand at 945.716 kb on - strand at 945.716 kb on - strand at 945.716 kb on - strand at 945.784 kb on + strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.847 kb on + strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.880 kb on + strand at 945.880 kb on + strand at 945.880 kb on + strand at 945.881 kb on - strand at 945.881 kb on - strand at 945.881 kb on - strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.910 kb on - strand at 945.910 kb on - strand at 945.953 kb on + strand at 945.953 kb on + strand at 945.953 kb on + strand at 945.954 kb on - strand at 945.954 kb on - strand at 946.223 kb on + strand, within Psyr_0834 at 946.223 kb on + strand, within Psyr_0834 at 946.223 kb on + strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.270 kb on - strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.369 kb on - strand, within Psyr_0834 at 946.458 kb on + strand, within Psyr_0834 at 946.534 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.581 kb on + strand, within Psyr_0834 at 946.718 kb on + strand, within Psyr_0834 at 946.789 kb on - strand at 946.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 944,751 + Psyr_0832 0.67 -1.1 944,808 + Psyr_0832 0.69 +0.9 944,808 + Psyr_0832 0.69 -2.1 944,955 + Psyr_0832 0.74 -1.0 944,956 - Psyr_0832 0.74 -1.9 944,956 - Psyr_0832 0.74 +1.1 944,956 - Psyr_0832 0.74 -1.1 944,956 - Psyr_0832 0.74 -2.9 945,105 + Psyr_0832 0.79 +0.9 945,106 - Psyr_0832 0.79 -0.1 945,106 - Psyr_0832 0.79 +0.3 945,106 - Psyr_0832 0.79 -0.9 945,106 - Psyr_0832 0.79 -1.0 945,115 - Psyr_0832 0.79 -0.7 945,435 + +0.3 945,436 - +0.9 945,508 - -1.9 945,601 - +1.3 945,601 - +0.9 945,601 - +1.7 945,716 - +0.2 945,716 - +0.2 945,716 - +0.4 945,784 + Psyr_0833 0.40 -1.5 945,785 - Psyr_0833 0.40 +0.0 945,785 - Psyr_0833 0.40 +1.1 945,785 - Psyr_0833 0.40 +1.1 945,785 - Psyr_0833 0.40 -1.2 945,785 - Psyr_0833 0.40 +0.2 945,785 - Psyr_0833 0.40 -0.1 945,785 - Psyr_0833 0.40 -0.4 945,785 - Psyr_0833 0.40 +0.9 945,847 + Psyr_0833 0.75 -3.4 945,848 - Psyr_0833 0.76 -1.5 945,848 - Psyr_0833 0.76 +0.1 945,848 - Psyr_0833 0.76 +0.9 945,880 + -0.7 945,880 + +1.0 945,880 + +1.1 945,881 - +1.8 945,881 - -0.4 945,881 - -0.6 945,882 + -0.4 945,882 + -0.1 945,882 + -0.7 945,882 + -0.7 945,882 + -0.5 945,882 + -0.6 945,882 + -0.4 945,883 - +0.7 945,883 - -0.1 945,883 - +0.9 945,883 - +1.9 945,883 - +0.1 945,883 - -0.2 945,883 - -1.2 945,883 - +1.3 945,883 - +1.9 945,883 - -1.5 945,883 - +0.8 945,883 - +0.2 945,883 - +0.5 945,883 - -0.4 945,883 - -0.3 945,883 - +0.1 945,883 - +0.1 945,883 - +0.4 945,883 - +0.9 945,883 - -0.8 945,883 - +0.3 945,883 - -0.4 945,886 + +1.4 945,886 + -1.5 945,886 + +0.3 945,886 + -1.3 945,887 - +0.9 945,887 - -0.9 945,887 - +1.0 945,887 - -0.1 945,887 - +0.3 945,887 - -2.6 945,887 - +0.5 945,887 - +0.4 945,887 - -0.7 945,887 - -0.9 945,887 - +0.3 945,887 - -0.6 945,887 - -1.1 945,887 - -1.0 945,887 - -1.4 945,887 - +0.4 945,887 - -0.0 945,887 - -0.5 945,887 - -0.0 945,887 - +0.4 945,887 - -0.6 945,887 - +1.0 945,887 - +0.4 945,887 - +0.2 945,887 - +0.8 945,887 - -0.3 945,887 - +0.5 945,887 - +2.0 945,887 - +1.5 945,887 - +1.3 945,887 - +0.2 945,887 - -0.1 945,910 - +1.7 945,910 - +2.1 945,953 + -1.7 945,953 + +0.9 945,953 + -0.6 945,954 - -1.4 945,954 - -0.4 946,223 + Psyr_0834 0.26 -0.7 946,223 + Psyr_0834 0.26 -1.7 946,223 + Psyr_0834 0.26 +0.1 946,224 - Psyr_0834 0.26 +1.6 946,224 - Psyr_0834 0.26 -0.4 946,224 - Psyr_0834 0.26 -0.6 946,224 - Psyr_0834 0.26 -0.7 946,270 - Psyr_0834 0.32 -0.1 946,368 + Psyr_0834 0.43 -1.1 946,368 + Psyr_0834 0.43 +0.2 946,368 + Psyr_0834 0.43 +0.4 946,368 + Psyr_0834 0.43 +1.9 946,369 - Psyr_0834 0.43 -1.1 946,458 + Psyr_0834 0.53 +1.3 946,534 - Psyr_0834 0.61 +0.3 946,538 - Psyr_0834 0.62 -0.1 946,538 - Psyr_0834 0.62 +0.7 946,581 + Psyr_0834 0.67 +0.1 946,718 + Psyr_0834 0.82 +0.9 946,789 - +0.6 946,858 + +0.2
Or see this region's nucleotide sequence