Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0186 and Psyr_0187 are separated by 70 nucleotides Psyr_0187 and Psyr_0188 are separated by 98 nucleotides Psyr_0188 and Psyr_0189 are separated by 242 nucleotides
Psyr_0186: Psyr_0186 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 198,786 to 199,478
_0186
Psyr_0187: Psyr_0187 - conserved hypothetical protein, at 199,549 to 199,875
_0187
Psyr_0188: Psyr_0188 - Protein of unknown function UPF0047, at 199,974 to 200,399
_0188
Psyr_0189: Psyr_0189 - ammonium transporter, at 200,642 to 201,979
_0189
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.975 kb on - strand, within Psyr_0186 at 198.975 kb on - strand, within Psyr_0186 at 199.163 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.207 kb on - strand, within Psyr_0186 at 199.381 kb on - strand, within Psyr_0186 at 199.381 kb on - strand, within Psyr_0186 at 199.381 kb on - strand, within Psyr_0186 at 199.500 kb on + strand at 199.501 kb on - strand at 199.501 kb on - strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.554 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.569 kb on - strand at 199.854 kb on + strand at 199.854 kb on + strand at 199.854 kb on + strand at 199.857 kb on + strand at 199.858 kb on - strand at 199.858 kb on - strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.881 kb on - strand at 199.881 kb on - strand at 199.881 kb on - strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.911 kb on + strand at 199.912 kb on - strand at 199.975 kb on + strand at 199.976 kb on - strand at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.224 kb on - strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.331 kb on + strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.399 kb on + strand at 200.399 kb on + strand at 200.399 kb on + strand at 200.399 kb on + strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.430 kb on - strand at 200.430 kb on - strand at 200.461 kb on + strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.575 kb on - strand at 200.575 kb on - strand at 200.575 kb on - strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.643 kb on + strand at 200.643 kb on + strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.770 kb on - strand at 200.770 kb on - strand at 200.934 kb on + strand, within Psyr_0189 at 201.094 kb on + strand, within Psyr_0189 at 201.259 kb on - strand, within Psyr_0189 at 201.314 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.327 kb on - strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 198,975 - Psyr_0186 0.27 -0.3 198,975 - Psyr_0186 0.27 -0.3 199,163 + Psyr_0186 0.54 +0.1 199,206 + Psyr_0186 0.61 -0.1 199,206 + Psyr_0186 0.61 +1.3 199,207 - Psyr_0186 0.61 +0.4 199,381 - Psyr_0186 0.86 -0.5 199,381 - Psyr_0186 0.86 +0.4 199,381 - Psyr_0186 0.86 +0.3 199,500 + +1.1 199,501 - +0.2 199,501 - +1.4 199,534 + -0.5 199,534 + +0.3 199,534 + -0.1 199,534 + -1.2 199,534 + -0.6 199,534 + -0.2 199,534 + -0.3 199,535 - +0.8 199,535 - +0.3 199,535 - +0.4 199,535 - -0.1 199,554 + -1.6 199,568 + -1.9 199,568 + -1.1 199,568 + -0.9 199,568 + +1.1 199,569 - +0.6 199,854 + +1.1 199,854 + -0.5 199,854 + -0.5 199,857 + +0.1 199,858 - -1.2 199,858 - -0.3 199,880 + -0.5 199,880 + -0.5 199,880 + -0.1 199,880 + -1.1 199,880 + -1.9 199,881 - -0.3 199,881 - +0.5 199,881 - -0.7 199,905 + +0.1 199,905 + -0.5 199,905 + +0.1 199,906 - +0.3 199,906 - +0.3 199,906 - +2.1 199,909 + -1.0 199,909 + -0.5 199,909 + +0.1 199,909 + -2.5 199,910 - +0.3 199,910 - +0.8 199,910 - -0.2 199,910 - +0.3 199,910 - -0.0 199,910 - -0.3 199,911 + +1.1 199,912 - +1.2 199,975 + +1.1 199,976 - -0.1 200,044 + Psyr_0188 0.16 +1.1 200,044 + Psyr_0188 0.16 -1.5 200,044 + Psyr_0188 0.16 +0.7 200,044 + Psyr_0188 0.16 -0.8 200,048 + Psyr_0188 0.17 -1.6 200,048 + Psyr_0188 0.17 +2.4 200,048 + Psyr_0188 0.17 +0.1 200,048 + Psyr_0188 0.17 +1.4 200,048 + Psyr_0188 0.17 -0.2 200,049 - Psyr_0188 0.18 +0.5 200,049 - Psyr_0188 0.18 -0.1 200,049 - Psyr_0188 0.18 -0.5 200,049 - Psyr_0188 0.18 -1.1 200,049 - Psyr_0188 0.18 +2.1 200,049 - Psyr_0188 0.18 -1.7 200,049 - Psyr_0188 0.18 -0.5 200,224 - Psyr_0188 0.59 +0.4 200,267 + Psyr_0188 0.69 -0.1 200,267 + Psyr_0188 0.69 +0.3 200,267 + Psyr_0188 0.69 -2.8 200,267 + Psyr_0188 0.69 +1.3 200,267 + Psyr_0188 0.69 -0.9 200,267 + Psyr_0188 0.69 +0.5 200,267 + Psyr_0188 0.69 -1.0 200,267 + Psyr_0188 0.69 +0.4 200,267 + Psyr_0188 0.69 -2.0 200,268 - Psyr_0188 0.69 -1.1 200,268 - Psyr_0188 0.69 +0.4 200,268 - Psyr_0188 0.69 +0.8 200,268 - Psyr_0188 0.69 +0.9 200,268 - Psyr_0188 0.69 -0.4 200,280 + Psyr_0188 0.72 -0.7 200,280 + Psyr_0188 0.72 +1.1 200,280 + Psyr_0188 0.72 -1.5 200,280 + Psyr_0188 0.72 -1.2 200,280 + Psyr_0188 0.72 -0.3 200,280 + Psyr_0188 0.72 -0.7 200,280 + Psyr_0188 0.72 +1.6 200,280 + Psyr_0188 0.72 +0.1 200,280 + Psyr_0188 0.72 -1.2 200,280 + Psyr_0188 0.72 -0.5 200,280 + Psyr_0188 0.72 +1.1 200,280 + Psyr_0188 0.72 -0.1 200,280 + Psyr_0188 0.72 -0.6 200,280 + Psyr_0188 0.72 +0.9 200,281 - Psyr_0188 0.72 +0.9 200,281 - Psyr_0188 0.72 -1.5 200,281 - Psyr_0188 0.72 +1.1 200,281 - Psyr_0188 0.72 -0.2 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 -1.7 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 +1.6 200,281 - Psyr_0188 0.72 +1.1 200,281 - Psyr_0188 0.72 -1.4 200,281 - Psyr_0188 0.72 +0.2 200,281 - Psyr_0188 0.72 +1.7 200,281 - +0.3 200,281 - Psyr_0188 0.72 -0.0 200,281 - Psyr_0188 0.72 +2.2 200,281 - Psyr_0188 0.72 -0.5 200,281 - Psyr_0188 0.72 -0.9 200,281 - Psyr_0188 0.72 -0.1 200,281 - Psyr_0188 0.72 +0.6 200,331 + Psyr_0188 0.84 -0.1 200,332 - Psyr_0188 0.84 -1.2 200,332 - Psyr_0188 0.84 -1.9 200,399 + -0.9 200,399 + -0.5 200,399 + -0.1 200,399 + -0.6 200,400 - +0.3 200,400 - +0.6 200,400 - +0.2 200,430 - -0.3 200,430 - +0.2 200,461 + -0.9 200,574 + +1.1 200,574 + -0.8 200,574 + -0.2 200,575 - -0.1 200,575 - -0.6 200,575 - -0.6 200,577 - -1.8 200,577 - -0.7 200,577 - -0.0 200,643 + +0.4 200,643 + +0.1 200,644 - +0.1 200,644 - +0.4 200,644 - +0.5 200,769 + +2.2 200,769 + -0.5 200,769 + -1.4 200,769 + -0.1 200,769 + +0.1 200,770 - +1.1 200,770 - +0.4 200,934 + Psyr_0189 0.22 +0.7 201,094 + Psyr_0189 0.34 +0.5 201,259 - Psyr_0189 0.46 -0.4 201,314 + Psyr_0189 0.50 +0.2 201,326 + Psyr_0189 0.51 +0.6 201,326 + Psyr_0189 0.51 +0.1 201,326 + Psyr_0189 0.51 +0.7 201,326 + Psyr_0189 0.51 -0.4 201,327 - Psyr_0189 0.51 +0.3 201,352 + Psyr_0189 0.53 +0.2 201,352 + Psyr_0189 0.53 -0.2 201,352 + Psyr_0189 0.53 -0.0 201,352 + Psyr_0189 0.53 +1.0 201,352 + Psyr_0189 0.53 -0.7 201,352 + Psyr_0189 0.53 +1.2 201,352 + Psyr_0189 0.53 -0.2 201,352 + Psyr_0189 0.53 -0.8 201,352 + Psyr_0189 0.53 +1.1 201,352 + Psyr_0189 0.53 -1.7 201,352 + Psyr_0189 0.53 -2.2 201,352 + Psyr_0189 0.53 -0.5 201,353 - Psyr_0189 0.53 +0.2 201,353 - Psyr_0189 0.53 +0.3 201,353 - Psyr_0189 0.53 -1.7 201,353 - Psyr_0189 0.53 +1.1 201,353 - Psyr_0189 0.53 -0.4 201,353 - Psyr_0189 0.53 -0.1 201,353 - Psyr_0189 0.53 +0.9 201,353 - Psyr_0189 0.53 +0.9 201,353 - Psyr_0189 0.53 -1.1 201,356 + Psyr_0189 0.53 -0.5 201,356 + Psyr_0189 0.53 -0.3 201,356 + Psyr_0189 0.53 +0.8 201,356 + Psyr_0189 0.53 -1.5 201,356 + Psyr_0189 0.53 +0.6 201,356 + Psyr_0189 0.53 -0.0 201,356 + Psyr_0189 0.53 +1.1 201,356 + Psyr_0189 0.53 -0.3 201,356 + Psyr_0189 0.53 -0.2 201,356 + Psyr_0189 0.53 +0.6 201,356 + Psyr_0189 0.53 -0.2 201,357 - Psyr_0189 0.53 +0.9 201,357 - Psyr_0189 0.53 -0.5 201,357 - Psyr_0189 0.53 +0.1 201,357 - Psyr_0189 0.53 +0.2 201,357 - Psyr_0189 0.53 +0.3 201,357 - Psyr_0189 0.53 -0.9 201,357 - Psyr_0189 0.53 +0.1 201,357 - Psyr_0189 0.53 -0.2 201,357 - Psyr_0189 0.53 +0.5 201,357 - Psyr_0189 0.53 +1.2 201,357 - Psyr_0189 0.53 -2.6 201,357 - Psyr_0189 0.53 -0.6 201,357 - Psyr_0189 0.53 -1.1 201,357 - Psyr_0189 0.53 -1.0
Or see this region's nucleotide sequence