Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0072

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0071 and Psyr_0072 are separated by 186 nucleotidesPsyr_0072 and Psyr_0073 are separated by 158 nucleotides Psyr_0071: Psyr_0071 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 72,996 to 74,972 _0071 Psyr_0072: Psyr_0072 - transcriptional regulator, LysR family, at 75,159 to 76,079 _0072 Psyr_0073: Psyr_0073 - Multi antimicrobial extrusion protein MatE, at 76,238 to 77,620 _0073 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3at 74.294 kb on + strand, within Psyr_0071at 74.350 kb on + strand, within Psyr_0071at 74.350 kb on + strand, within Psyr_0071at 74.351 kb on - strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.422 kb on + strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.423 kb on - strand, within Psyr_0071at 74.426 kb on - strand, within Psyr_0071at 74.440 kb on - strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.455 kb on + strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.456 kb on - strand, within Psyr_0071at 74.483 kb on - strand, within Psyr_0071at 74.720 kb on + strand, within Psyr_0071at 74.891 kb on + strandat 74.894 kb on + strandat 74.894 kb on + strandat 74.895 kb on - strandat 74.903 kb on + strandat 74.903 kb on + strandat 74.933 kb on + strandat 74.933 kb on + strandat 74.972 kb on + strandat 74.972 kb on + strandat 74.972 kb on + strandat 74.972 kb on + strandat 74.972 kb on + strandat 74.972 kb on + strandat 74.972 kb on + strandat 74.973 kb on - strandat 74.973 kb on - strandat 74.973 kb on - strandat 74.973 kb on - strandat 74.973 kb on - strandat 75.016 kb on + strandat 75.016 kb on + strandat 75.036 kb on + strandat 75.036 kb on + strandat 75.036 kb on + strandat 75.036 kb on + strandat 75.036 kb on + strandat 75.036 kb on + strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.037 kb on - strandat 75.049 kb on + strandat 75.049 kb on + strandat 75.049 kb on + strandat 75.049 kb on + strandat 75.054 kb on + strandat 75.055 kb on - strandat 75.101 kb on + strandat 75.101 kb on + strandat 75.101 kb on + strandat 75.101 kb on + strandat 75.102 kb on - strandat 75.161 kb on - strandat 75.168 kb on + strandat 75.168 kb on + strandat 75.271 kb on + strand, within Psyr_0072at 75.271 kb on + strand, within Psyr_0072at 75.271 kb on + strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.272 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.275 kb on - strand, within Psyr_0072at 75.639 kb on + strand, within Psyr_0072at 75.639 kb on + strand, within Psyr_0072at 75.640 kb on - strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.803 kb on + strand, within Psyr_0072at 75.804 kb on - strand, within Psyr_0072at 75.804 kb on - strand, within Psyr_0072at 75.905 kb on + strand, within Psyr_0072at 75.906 kb on - strand, within Psyr_0072at 75.959 kb on + strand, within Psyr_0072at 76.047 kb on + strandat 76.048 kb on - strandat 76.048 kb on - strandat 76.114 kb on + strandat 76.114 kb on + strandat 76.140 kb on + strandat 76.163 kb on - strandat 76.197 kb on + strandat 76.197 kb on + strandat 76.198 kb on - strandat 76.198 kb on - strandat 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.400 kb on + strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.401 kb on - strand, within Psyr_0073at 76.613 kb on - strand, within Psyr_0073at 76.613 kb on - strand, within Psyr_0073at 76.764 kb on - strand, within Psyr_0073at 76.871 kb on - strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.982 kb on + strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073at 76.983 kb on - strand, within Psyr_0073

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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74,294 + Psyr_0071 0.66 +1.8
74,350 + Psyr_0071 0.68 -0.5
74,350 + Psyr_0071 0.68 +0.0
74,351 - Psyr_0071 0.69 +0.4
74,422 + Psyr_0071 0.72 -0.3
74,422 + Psyr_0071 0.72 -1.2
74,422 + Psyr_0071 0.72 +1.2
74,422 + Psyr_0071 0.72 -1.1
74,422 + Psyr_0071 0.72 -0.2
74,422 + Psyr_0071 0.72 +1.0
74,422 + Psyr_0071 0.72 +0.5
74,422 + Psyr_0071 0.72 +0.4
74,422 + Psyr_0071 0.72 -0.4
74,422 + Psyr_0071 0.72 -0.6
74,422 + Psyr_0071 0.72 +3.1
74,422 + Psyr_0071 0.72 +1.1
74,422 + Psyr_0071 0.72 -1.9
74,422 + Psyr_0071 0.72 +1.7
74,422 + Psyr_0071 0.72 -0.6
74,422 + Psyr_0071 0.72 +0.5
74,423 - Psyr_0071 0.72 +0.4
74,423 - Psyr_0071 0.72 -1.5
74,423 - Psyr_0071 0.72 -0.5
74,423 - Psyr_0071 0.72 +0.9
74,423 - Psyr_0071 0.72 -0.6
74,423 - Psyr_0071 0.72 +0.5
74,423 - Psyr_0071 0.72 +0.3
74,423 - Psyr_0071 0.72 +0.7
74,423 - Psyr_0071 0.72 +0.7
74,423 - Psyr_0071 0.72 +0.1
74,423 - Psyr_0071 0.72 -0.5
74,426 - Psyr_0071 0.72 +2.1
74,440 - Psyr_0071 0.73 -1.0
74,455 + Psyr_0071 0.74 -0.0
74,455 + Psyr_0071 0.74 -0.3
74,455 + Psyr_0071 0.74 +0.9
74,455 + Psyr_0071 0.74 -1.5
74,455 + Psyr_0071 0.74 -0.3
74,455 + Psyr_0071 0.74 +0.5
74,455 + Psyr_0071 0.74 -0.4
74,455 + Psyr_0071 0.74 -0.4
74,455 + Psyr_0071 0.74 -1.1
74,455 + Psyr_0071 0.74 -0.9
74,455 + Psyr_0071 0.74 -0.5
74,455 + Psyr_0071 0.74 +0.4
74,455 + Psyr_0071 0.74 +1.1
74,456 - Psyr_0071 0.74 +0.8
74,456 - Psyr_0071 0.74 -0.4
74,456 - Psyr_0071 0.74 -0.9
74,456 - Psyr_0071 0.74 -0.9
74,456 - Psyr_0071 0.74 +1.1
74,456 - Psyr_0071 0.74 +0.1
74,456 - Psyr_0071 0.74 -1.1
74,456 - Psyr_0071 0.74 -1.0
74,456 - Psyr_0071 0.74 -1.2
74,456 - Psyr_0071 0.74 +1.1
74,456 - Psyr_0071 0.74 +1.7
74,456 - Psyr_0071 0.74 -1.7
74,456 - Psyr_0071 0.74 -1.0
74,456 - Psyr_0071 0.74 +0.1
74,456 - Psyr_0071 0.74 +1.1
74,456 - Psyr_0071 0.74 +0.5
74,456 - Psyr_0071 0.74 +0.3
74,483 - Psyr_0071 0.75 +0.1
74,720 + Psyr_0071 0.87 +0.5
74,891 + +0.6
74,894 + -0.2
74,894 + -0.5
74,895 - +0.1
74,903 + +0.2
74,903 + +0.2
74,933 + -0.8
74,933 + +0.4
74,972 + -0.5
74,972 + -0.0
74,972 + -1.8
74,972 + -2.7
74,972 + +0.1
74,972 + +0.3
74,972 + +0.1
74,973 - -0.4
74,973 - +0.8
74,973 - -0.9
74,973 - -0.2
74,973 - -0.9
75,016 + -0.1
75,016 + -0.1
75,036 + -0.6
75,036 + +1.1
75,036 + -1.1
75,036 + -0.2
75,036 + +1.9
75,036 + -1.7
75,037 - -0.5
75,037 - -0.0
75,037 - -0.9
75,037 - +0.1
75,037 - +0.9
75,037 - +0.0
75,037 - +0.2
75,037 - +0.7
75,037 - -0.0
75,037 - -0.5
75,037 - -0.0
75,049 + -0.8
75,049 + +0.4
75,049 + -2.1
75,049 + -0.8
75,054 + -0.3
75,055 - -2.7
75,101 + +1.8
75,101 + +1.1
75,101 + -0.3
75,101 + -1.6
75,102 - -0.1
75,161 - -0.6
75,168 + +0.9
75,168 + -2.5
75,271 + Psyr_0072 0.12 -0.4
75,271 + Psyr_0072 0.12 -0.4
75,271 + Psyr_0072 0.12 -1.0
75,272 - Psyr_0072 0.12 -0.8
75,272 - Psyr_0072 0.12 -0.4
75,272 - Psyr_0072 0.12 -0.6
75,272 - Psyr_0072 0.12 -0.4
75,272 - Psyr_0072 0.12 -0.9
75,275 - Psyr_0072 0.13 -0.1
75,275 - Psyr_0072 0.13 -0.6
75,275 - Psyr_0072 0.13 -0.6
75,275 - Psyr_0072 0.13 -0.3
75,639 + Psyr_0072 0.52 +1.6
75,639 + Psyr_0072 0.52 +0.9
75,640 - Psyr_0072 0.52 +0.1
75,803 + Psyr_0072 0.70 -1.5
75,803 + Psyr_0072 0.70 -0.4
75,803 + Psyr_0072 0.70 -0.4
75,803 + Psyr_0072 0.70 -0.9
75,804 - Psyr_0072 0.70 -0.5
75,804 - Psyr_0072 0.70 +0.4
75,905 + Psyr_0072 0.81 -0.1
75,906 - Psyr_0072 0.81 +0.1
75,959 + Psyr_0072 0.87 -0.7
76,047 + +0.6
76,048 - +0.2
76,048 - +0.6
76,114 + -0.5
76,114 + -0.9
76,140 + -0.3
76,163 - -0.2
76,197 + +0.7
76,197 + -0.5
76,198 - +0.4
76,198 - +0.1
76,400 + Psyr_0073 0.12 +0.6
76,400 + Psyr_0073 0.12 +0.6
76,400 + Psyr_0073 0.12 +0.7
76,400 + Psyr_0073 0.12 -0.7
76,400 + Psyr_0073 0.12 -0.9
76,401 - Psyr_0073 0.12 +0.7
76,401 - Psyr_0073 0.12 +0.1
76,401 - Psyr_0073 0.12 -0.3
76,401 - Psyr_0073 0.12 -0.8
76,401 - Psyr_0073 0.12 +0.3
76,613 - Psyr_0073 0.27 -0.4
76,613 - Psyr_0073 0.27 -0.5
76,764 - Psyr_0073 0.38 -0.1
76,871 - Psyr_0073 0.46 +0.3
76,982 + Psyr_0073 0.54 +1.1
76,982 + Psyr_0073 0.54 +0.4
76,982 + Psyr_0073 0.54 +0.2
76,982 + Psyr_0073 0.54 +0.3
76,982 + Psyr_0073 0.54 +0.1
76,982 + Psyr_0073 0.54 -0.3
76,982 + Psyr_0073 0.54 -0.7
76,982 + Psyr_0073 0.54 +0.0
76,983 - Psyr_0073 0.54 +1.5
76,983 - Psyr_0073 0.54 -2.1
76,983 - Psyr_0073 0.54 -0.1
76,983 - Psyr_0073 0.54 +0.4
76,983 - Psyr_0073 0.54 -1.1
76,983 - Psyr_0073 0.54 -0.4
76,983 - Psyr_0073 0.54 -0.2
76,983 - Psyr_0073 0.54 +0.8
76,983 - Psyr_0073 0.54 -0.3
76,983 - Psyr_0073 0.54 +1.1
76,983 - Psyr_0073 0.54 +0.6

Or see this region's nucleotide sequence