Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08960

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS08950 and MMJJ_RS08955 are separated by 21 nucleotidesMMJJ_RS08955 and MMJJ_RS08960 are separated by 46 nucleotidesMMJJ_RS08960 and MMJJ_RS08965 are separated by 34 nucleotides MMJJ_RS08950: MMJJ_RS08950 - DUF22 domain-containing protein, at 1,649,662 to 1,650,027 _RS08950 MMJJ_RS08955: MMJJ_RS08955 - V-type ATP synthase subunit D, at 1,650,049 to 1,650,693 _RS08955 MMJJ_RS08960: MMJJ_RS08960 - V-type ATP synthase subunit B, at 1,650,740 to 1,652,128 _RS08960 MMJJ_RS08965: MMJJ_RS08965 - ATP synthase subunit A, at 1,652,163 to 1,653,923 _RS08965 Position (kb) 1650 1651 1652 1653Strain fitness (log2 ratio) -1 0 1at 1649.744 kb on - strand, within MMJJ_RS08950at 1649.825 kb on - strand, within MMJJ_RS08950at 1649.826 kb on + strand, within MMJJ_RS08950at 1649.947 kb on - strand, within MMJJ_RS08950at 1649.948 kb on + strand, within MMJJ_RS08950at 1649.953 kb on - strand, within MMJJ_RS08950at 1652.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,649,744 - MMJJ_RS08950 0.22 -0.9
1,649,825 - MMJJ_RS08950 0.45 +0.2
1,649,826 + MMJJ_RS08950 0.45 -0.2
1,649,947 - MMJJ_RS08950 0.78 -0.2
1,649,948 + MMJJ_RS08950 0.78 +0.0
1,649,953 - MMJJ_RS08950 0.80 -0.6
1,652,407 - +0.3

Or see this region's nucleotide sequence