Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08115

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS08110 and MMJJ_RS08115 are separated by 18 nucleotidesMMJJ_RS08115 and MMJJ_RS08120 are separated by 62 nucleotidesMMJJ_RS08120 and MMJJ_RS08125 are separated by 135 nucleotides MMJJ_RS08110: MMJJ_RS08110 - thiolase domain-containing protein, at 1,487,712 to 1,488,890 _RS08110 MMJJ_RS08115: MMJJ_RS08115 - hydroxymethylglutaryl-CoA synthase, at 1,488,909 to 1,489,958 _RS08115 MMJJ_RS08120: MMJJ_RS08120 - helix-turn-helix domain-containing protein, at 1,490,021 to 1,490,710 _RS08120 MMJJ_RS08125: MMJJ_RS08125 - DNA double-strand break repair nuclease NurA, at 1,490,846 to 1,491,910 _RS08125 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -1 0 1at 1488.125 kb on - strandat 1488.126 kb on + strand, within MMJJ_RS08110at 1489.156 kb on + strandat 1489.533 kb on + strand, within MMJJ_RS08115at 1489.722 kb on - strand, within MMJJ_RS08115at 1489.939 kb on + strandat 1489.948 kb on + strandat 1490.510 kb on - strandat 1490.689 kb on - strandat 1490.813 kb on - strandat 1490.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,488,125 - -1.2
1,488,126 + MMJJ_RS08110 0.35 -1.2
1,489,156 + -0.8
1,489,533 + MMJJ_RS08115 0.59 +0.8
1,489,722 - MMJJ_RS08115 0.77 -1.2
1,489,939 + -0.2
1,489,948 + -0.8
1,490,510 - +0.8
1,490,689 - +1.3
1,490,813 - +1.1
1,490,842 - +0.3

Or see this region's nucleotide sequence