Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07845

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07840 and MMJJ_RS07845 are separated by 48 nucleotidesMMJJ_RS07845 and MMJJ_RS07850 are separated by 78 nucleotides MMJJ_RS07840: MMJJ_RS07840 - Glu-tRNA(Gln) amidotransferase subunit GatD, at 1,436,429 to 1,437,685 _RS07840 MMJJ_RS07845: MMJJ_RS07845 - Glu-tRNA(Gln) amidotransferase subunit GatE, at 1,437,734 to 1,439,629 _RS07845 MMJJ_RS07850: MMJJ_RS07850 - ATP-binding protein, at 1,439,708 to 1,441,201 _RS07850 Position (kb) 1437 1438 1439 1440Strain fitness (log2 ratio) -2 -1 0 1 2at 1436.949 kb on - strand, within MMJJ_RS07840at 1436.973 kb on - strand, within MMJJ_RS07840at 1437.105 kb on - strand, within MMJJ_RS07840at 1437.106 kb on + strand, within MMJJ_RS07840at 1437.277 kb on + strand, within MMJJ_RS07840at 1439.018 kb on - strand, within MMJJ_RS07845at 1439.631 kb on - strandat 1439.641 kb on - strandat 1439.642 kb on + strandat 1439.684 kb on - strandat 1439.684 kb on - strandat 1439.684 kb on - strandat 1439.684 kb on - strandat 1439.685 kb on + strandat 1439.685 kb on + strandat 1439.686 kb on - strandat 1439.690 kb on + strandat 1439.726 kb on - strandat 1439.726 kb on - strandat 1439.727 kb on + strandat 1439.727 kb on + strandat 1439.727 kb on + strandat 1439.733 kb on - strandat 1439.733 kb on - strandat 1439.733 kb on - strandat 1439.733 kb on - strandat 1439.734 kb on + strandat 1439.734 kb on + strandat 1439.796 kb on + strandat 1439.796 kb on + strandat 1439.810 kb on - strandat 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.877 kb on - strand, within MMJJ_RS07850at 1439.878 kb on + strand, within MMJJ_RS07850at 1439.878 kb on + strand, within MMJJ_RS07850at 1439.878 kb on + strand, within MMJJ_RS07850at 1439.878 kb on + strand, within MMJJ_RS07850at 1439.879 kb on - strand, within MMJJ_RS07850at 1439.879 kb on - strand, within MMJJ_RS07850at 1439.879 kb on - strand, within MMJJ_RS07850at 1439.880 kb on + strand, within MMJJ_RS07850at 1439.880 kb on + strand, within MMJJ_RS07850at 1439.887 kb on + strand, within MMJJ_RS07850at 1439.930 kb on - strand, within MMJJ_RS07850at 1439.968 kb on + strand, within MMJJ_RS07850at 1439.975 kb on + strand, within MMJJ_RS07850at 1440.017 kb on - strand, within MMJJ_RS07850at 1440.114 kb on - strand, within MMJJ_RS07850at 1440.114 kb on - strand, within MMJJ_RS07850at 1440.115 kb on + strand, within MMJJ_RS07850at 1440.115 kb on + strand, within MMJJ_RS07850at 1440.123 kb on - strand, within MMJJ_RS07850at 1440.123 kb on - strand, within MMJJ_RS07850at 1440.124 kb on + strand, within MMJJ_RS07850at 1440.124 kb on + strand, within MMJJ_RS07850at 1440.144 kb on - strand, within MMJJ_RS07850at 1440.155 kb on + strand, within MMJJ_RS07850at 1440.167 kb on + strand, within MMJJ_RS07850at 1440.167 kb on + strand, within MMJJ_RS07850at 1440.206 kb on + strand, within MMJJ_RS07850at 1440.226 kb on + strand, within MMJJ_RS07850at 1440.248 kb on - strand, within MMJJ_RS07850at 1440.248 kb on - strand, within MMJJ_RS07850at 1440.249 kb on + strand, within MMJJ_RS07850at 1440.249 kb on + strand, within MMJJ_RS07850at 1440.249 kb on + strand, within MMJJ_RS07850at 1440.277 kb on + strand, within MMJJ_RS07850at 1440.277 kb on + strand, within MMJJ_RS07850at 1440.277 kb on + strand, within MMJJ_RS07850at 1440.290 kb on + strand, within MMJJ_RS07850at 1440.294 kb on - strand, within MMJJ_RS07850at 1440.313 kb on + strand, within MMJJ_RS07850at 1440.313 kb on + strandat 1440.314 kb on - strand, within MMJJ_RS07850at 1440.326 kb on - strand, within MMJJ_RS07850at 1440.368 kb on + strand, within MMJJ_RS07850at 1440.437 kb on + strand, within MMJJ_RS07850at 1440.437 kb on + strand, within MMJJ_RS07850at 1440.482 kb on - strand, within MMJJ_RS07850at 1440.486 kb on + strand, within MMJJ_RS07850at 1440.565 kb on - strand, within MMJJ_RS07850at 1440.607 kb on - strand, within MMJJ_RS07850at 1440.608 kb on + strandat 1440.610 kb on + strand, within MMJJ_RS07850

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,436,949 - MMJJ_RS07840 0.41 -1.8
1,436,973 - MMJJ_RS07840 0.43 +1.0
1,437,105 - MMJJ_RS07840 0.54 -0.0
1,437,106 + MMJJ_RS07840 0.54 -0.0
1,437,277 + MMJJ_RS07840 0.67 +0.8
1,439,018 - MMJJ_RS07845 0.68 +1.8
1,439,631 - +0.9
1,439,641 - +0.6
1,439,642 + +1.1
1,439,684 - +0.5
1,439,684 - -1.1
1,439,684 - -0.4
1,439,684 - +0.2
1,439,685 + -0.6
1,439,685 + +0.0
1,439,686 - +0.7
1,439,690 + -0.8
1,439,726 - -0.2
1,439,726 - +0.5
1,439,727 + +1.2
1,439,727 + +0.1
1,439,727 + -0.2
1,439,733 - +0.5
1,439,733 - +0.4
1,439,733 - +0.1
1,439,733 - +0.1
1,439,734 + +0.0
1,439,734 + +0.1
1,439,796 + -0.0
1,439,796 + +0.2
1,439,810 - +0.1
1,439,877 - MMJJ_RS07850 0.11 +0.5
1,439,877 - MMJJ_RS07850 0.11 +0.2
1,439,877 - MMJJ_RS07850 0.11 +0.2
1,439,877 - MMJJ_RS07850 0.11 +0.2
1,439,877 - MMJJ_RS07850 0.11 -0.2
1,439,877 - MMJJ_RS07850 0.11 -0.5
1,439,877 - MMJJ_RS07850 0.11 +0.9
1,439,877 - MMJJ_RS07850 0.11 +0.2
1,439,878 + MMJJ_RS07850 0.11 -0.5
1,439,878 + MMJJ_RS07850 0.11 +1.0
1,439,878 + MMJJ_RS07850 0.11 -0.2
1,439,878 + MMJJ_RS07850 0.11 -0.1
1,439,879 - MMJJ_RS07850 0.11 +0.2
1,439,879 - MMJJ_RS07850 0.11 +0.4
1,439,879 - MMJJ_RS07850 0.11 -0.5
1,439,880 + MMJJ_RS07850 0.12 +0.1
1,439,880 + MMJJ_RS07850 0.12 +0.0
1,439,887 + MMJJ_RS07850 0.12 +0.4
1,439,930 - MMJJ_RS07850 0.15 -0.6
1,439,968 + MMJJ_RS07850 0.17 -0.7
1,439,975 + MMJJ_RS07850 0.18 +0.8
1,440,017 - MMJJ_RS07850 0.21 +0.0
1,440,114 - MMJJ_RS07850 0.27 +0.3
1,440,114 - MMJJ_RS07850 0.27 -0.2
1,440,115 + MMJJ_RS07850 0.27 -0.2
1,440,115 + MMJJ_RS07850 0.27 +0.4
1,440,123 - MMJJ_RS07850 0.28 -0.4
1,440,123 - MMJJ_RS07850 0.28 -0.6
1,440,124 + MMJJ_RS07850 0.28 +0.1
1,440,124 + MMJJ_RS07850 0.28 +1.0
1,440,144 - MMJJ_RS07850 0.29 +0.1
1,440,155 + MMJJ_RS07850 0.30 -0.2
1,440,167 + MMJJ_RS07850 0.31 -0.2
1,440,167 + MMJJ_RS07850 0.31 -0.1
1,440,206 + MMJJ_RS07850 0.33 +0.1
1,440,226 + MMJJ_RS07850 0.35 +0.2
1,440,248 - MMJJ_RS07850 0.36 +0.4
1,440,248 - MMJJ_RS07850 0.36 -0.2
1,440,249 + MMJJ_RS07850 0.36 +0.5
1,440,249 + MMJJ_RS07850 0.36 +0.2
1,440,249 + MMJJ_RS07850 0.36 +0.0
1,440,277 + MMJJ_RS07850 0.38 -0.1
1,440,277 + MMJJ_RS07850 0.38 +0.2
1,440,277 + MMJJ_RS07850 0.38 +0.8
1,440,290 + MMJJ_RS07850 0.39 +0.1
1,440,294 - MMJJ_RS07850 0.39 -0.5
1,440,313 + MMJJ_RS07850 0.40 -0.4
1,440,313 + +0.8
1,440,314 - MMJJ_RS07850 0.41 -0.3
1,440,326 - MMJJ_RS07850 0.41 +0.0
1,440,368 + MMJJ_RS07850 0.44 -0.3
1,440,437 + MMJJ_RS07850 0.49 -0.1
1,440,437 + MMJJ_RS07850 0.49 +0.6
1,440,482 - MMJJ_RS07850 0.52 +0.5
1,440,486 + MMJJ_RS07850 0.52 -0.3
1,440,565 - MMJJ_RS07850 0.57 +0.1
1,440,607 - MMJJ_RS07850 0.60 +0.8
1,440,608 + +2.1
1,440,610 + MMJJ_RS07850 0.60 -0.0

Or see this region's nucleotide sequence