Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07465

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07460 and MMJJ_RS07465 are separated by 10 nucleotidesMMJJ_RS07465 and MMJJ_RS07470 are separated by 19 nucleotides MMJJ_RS07460: MMJJ_RS07460 - selenocysteine-specific translation elongation factor, at 1,369,924 to 1,371,330 _RS07460 MMJJ_RS07465: MMJJ_RS07465 - mevalonate kinase, at 1,371,341 to 1,372,294 _RS07465 MMJJ_RS07470: MMJJ_RS07470 - 50S ribosome-binding GTPase, at 1,372,314 to 1,373,468 _RS07470 Position (kb) 1371 1372 1373Strain fitness (log2 ratio) -1 0 1at 1370.531 kb on - strand, within MMJJ_RS07460at 1370.542 kb on + strand, within MMJJ_RS07460at 1370.595 kb on - strandat 1371.316 kb on + strandat 1371.316 kb on + strandat 1371.371 kb on + strandat 1371.566 kb on - strand, within MMJJ_RS07465at 1372.093 kb on + strand, within MMJJ_RS07465at 1372.311 kb on + strandat 1372.476 kb on - strand, within MMJJ_RS07470at 1372.527 kb on - strand, within MMJJ_RS07470at 1372.686 kb on - strandat 1372.805 kb on + strand, within MMJJ_RS07470at 1373.257 kb on + strand, within MMJJ_RS07470

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,370,531 - MMJJ_RS07460 0.43 -0.2
1,370,542 + MMJJ_RS07460 0.44 +0.5
1,370,595 - -0.2
1,371,316 + -0.8
1,371,316 + +0.6
1,371,371 + -1.6
1,371,566 - MMJJ_RS07465 0.24 +0.4
1,372,093 + MMJJ_RS07465 0.79 -0.2
1,372,311 + -0.2
1,372,476 - MMJJ_RS07470 0.14 -1.2
1,372,527 - MMJJ_RS07470 0.18 +0.5
1,372,686 - +1.4
1,372,805 + MMJJ_RS07470 0.43 +0.0
1,373,257 + MMJJ_RS07470 0.82 -0.9

Or see this region's nucleotide sequence