Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07320

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07310 and MMJJ_RS07315 are separated by 16 nucleotidesMMJJ_RS07315 and MMJJ_RS07320 are separated by 197 nucleotidesMMJJ_RS07320 and MMJJ_RS07325 are separated by 64 nucleotides MMJJ_RS07310: MMJJ_RS07310 - NusA-like transcription termination signal-binding factor, at 1,340,354 to 1,340,875 _RS07310 MMJJ_RS07315: MMJJ_RS07315 - 50S ribosomal protein L30e, at 1,340,892 to 1,341,212 _RS07315 MMJJ_RS07320: MMJJ_RS07320 - DNA-directed RNA polymerase subunit A'', at 1,341,410 to 1,342,570 _RS07320 MMJJ_RS07325: MMJJ_RS07325 - 'DNA-directed RNA polymerase subunit A'' pseudo=_no_value transl_table=11, at 1,342,635 to 1,345,283 _RS07325 Position (kb) 1341 1342 1343Strain fitness (log2 ratio) -1 0 1 2at 1341.197 kb on - strandat 1341.327 kb on - strandat 1341.328 kb on + strandat 1341.331 kb on - strandat 1341.331 kb on - strandat 1341.332 kb on + strandat 1341.332 kb on + strandat 1341.333 kb on - strandat 1341.333 kb on - strandat 1341.333 kb on - strandat 1341.338 kb on + strandat 1341.357 kb on - strandat 1341.357 kb on - strandat 1341.357 kb on - strandat 1341.358 kb on + strandat 1341.366 kb on - strandat 1341.381 kb on + strandat 1341.433 kb on + strandat 1341.449 kb on - strandat 1341.449 kb on - strandat 1341.450 kb on + strandat 1341.450 kb on + strandat 1342.106 kb on + strand, within MMJJ_RS07320at 1342.581 kb on - strandat 1342.612 kb on - strandat 1342.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,341,197 - +0.4
1,341,327 - -0.2
1,341,328 + +0.1
1,341,331 - +0.2
1,341,331 - -0.2
1,341,332 + +0.1
1,341,332 + +0.1
1,341,333 - +0.3
1,341,333 - -0.8
1,341,333 - -0.4
1,341,338 + +0.2
1,341,357 - -0.4
1,341,357 - -1.1
1,341,357 - +0.2
1,341,358 + +0.2
1,341,366 - -0.1
1,341,381 + +0.2
1,341,433 + -0.1
1,341,449 - +1.6
1,341,449 - +0.5
1,341,450 + +1.2
1,341,450 + +0.2
1,342,106 + MMJJ_RS07320 0.60 -0.2
1,342,581 - +1.8
1,342,612 - +1.9
1,342,699 + +0.4

Or see this region's nucleotide sequence