Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07045

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07040 and MMJJ_RS07045 are separated by 227 nucleotidesMMJJ_RS07045 and MMJJ_RS07050 are separated by 14 nucleotidesMMJJ_RS07050 and MMJJ_RS07055 are separated by 31 nucleotides MMJJ_RS07040: MMJJ_RS07040 - preprotein translocase subunit SecY, at 1,293,502 to 1,294,830 _RS07040 MMJJ_RS07045: MMJJ_RS07045 - 50S ribosomal protein L15, at 1,295,058 to 1,295,489 _RS07045 MMJJ_RS07050: MMJJ_RS07050 - 50S ribosomal protein L30, at 1,295,504 to 1,295,968 _RS07050 MMJJ_RS07055: MMJJ_RS07055 - 30S ribosomal protein S5, at 1,296,000 to 1,296,677 _RS07055 Position (kb) 1295 1296Strain fitness (log2 ratio) -2 -1 0 1at 1294.328 kb on - strand, within MMJJ_RS07040at 1294.473 kb on - strandat 1294.808 kb on + strandat 1294.976 kb on - strandat 1294.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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1,294,328 - MMJJ_RS07040 0.62 +1.1
1,294,473 - +0.4
1,294,808 + -1.2
1,294,976 - -2.2
1,294,996 + -0.5

Or see this region's nucleotide sequence