Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05220 and MMJJ_RS05225 are separated by 502 nucleotides MMJJ_RS05225 and MMJJ_RS05230 are separated by 18 nucleotides MMJJ_RS05230 and MMJJ_RS05235 are separated by 9 nucleotides
MMJJ_RS05220: MMJJ_RS05220 - type 2 isopentenyl-diphosphate Delta-isomerase, at 964,162 to 965,229
_RS05220
MMJJ_RS05225: MMJJ_RS05225 - Gar1/Naf1 family protein, at 965,732 to 966,013
_RS05225
MMJJ_RS05230: MMJJ_RS05230 - transcription initiation factor IIB, at 966,032 to 967,051
_RS05230
MMJJ_RS05235: MMJJ_RS05235 - Flp pilus assembly complex ATPase component TadA, at 967,061 to 968,710
_RS05235
Position (kb) 966
967
968 Strain fitness (log2 ratio) -1
0
1
2
3 at 965.160 kb on + strand at 965.245 kb on - strand at 965.246 kb on + strand at 965.246 kb on + strand at 965.256 kb on + strand at 965.294 kb on - strand at 965.294 kb on - strand at 965.295 kb on + strand at 965.301 kb on - strand at 965.340 kb on - strand at 965.341 kb on + strand at 965.341 kb on + strand at 965.341 kb on + strand at 965.341 kb on + strand at 965.341 kb on + strand at 965.343 kb on - strand at 965.343 kb on - strand at 965.343 kb on - strand at 965.343 kb on - strand at 965.344 kb on + strand at 965.344 kb on + strand at 965.349 kb on + strand at 965.354 kb on - strand at 965.354 kb on - strand at 965.355 kb on + strand at 965.361 kb on + strand at 965.375 kb on - strand at 965.403 kb on - strand at 965.416 kb on + strand at 965.420 kb on + strand at 965.427 kb on + strand at 965.502 kb on - strand at 965.528 kb on - strand at 965.528 kb on - strand at 965.529 kb on + strand at 965.553 kb on - strand at 965.554 kb on + strand at 965.554 kb on + strand at 965.554 kb on + strand at 965.554 kb on + strand at 965.557 kb on - strand at 965.557 kb on - strand at 965.557 kb on - strand at 965.557 kb on - strand at 965.558 kb on + strand at 965.558 kb on + strand at 965.558 kb on + strand at 965.558 kb on + strand at 965.558 kb on + strand at 965.585 kb on - strand at 965.585 kb on - strand at 965.586 kb on + strand at 965.614 kb on + strand at 965.614 kb on + strand at 965.615 kb on - strand at 965.616 kb on + strand at 965.617 kb on - strand at 965.619 kb on - strand at 965.620 kb on + strand at 965.633 kb on - strand at 965.635 kb on - strand at 965.636 kb on + strand at 965.639 kb on - strand at 965.660 kb on - strand at 965.660 kb on - strand at 965.706 kb on - strand at 965.706 kb on - strand at 965.824 kb on + strand at 965.843 kb on + strand, within MMJJ_RS05225 at 965.891 kb on - strand at 965.895 kb on - strand, within MMJJ_RS05225 at 966.250 kb on + strand, within MMJJ_RS05230 at 967.029 kb on - strand at 967.030 kb on + strand at 967.042 kb on - strand at 967.047 kb on - strand at 967.047 kb on - strand at 967.047 kb on - strand at 967.048 kb on + strand at 967.049 kb on - strand at 967.049 kb on - strand at 967.050 kb on + strand at 967.050 kb on + strand at 967.050 kb on + strand at 967.050 kb on + strand at 967.050 kb on + strand at 967.060 kb on - strand at 967.121 kb on + strand at 967.125 kb on - strand at 967.156 kb on + strand at 967.255 kb on - strand, within MMJJ_RS05235 at 967.266 kb on - strand, within MMJJ_RS05235 at 967.266 kb on - strand, within MMJJ_RS05235 at 967.267 kb on + strand, within MMJJ_RS05235 at 967.274 kb on + strand, within MMJJ_RS05235 at 967.284 kb on - strand, within MMJJ_RS05235 at 967.311 kb on - strand, within MMJJ_RS05235 at 967.311 kb on - strand, within MMJJ_RS05235 at 967.311 kb on - strand, within MMJJ_RS05235 at 967.311 kb on - strand, within MMJJ_RS05235 at 967.312 kb on + strand at 967.343 kb on - strand, within MMJJ_RS05235 at 967.343 kb on - strand, within MMJJ_RS05235 at 967.344 kb on + strand, within MMJJ_RS05235 at 967.344 kb on + strand, within MMJJ_RS05235 at 967.344 kb on + strand, within MMJJ_RS05235 at 967.344 kb on + strand, within MMJJ_RS05235 at 967.344 kb on + strand, within MMJJ_RS05235 at 967.366 kb on - strand, within MMJJ_RS05235 at 967.366 kb on - strand, within MMJJ_RS05235 at 967.367 kb on + strand, within MMJJ_RS05235 at 967.367 kb on + strand, within MMJJ_RS05235 at 967.372 kb on - strand, within MMJJ_RS05235 at 967.405 kb on - strand, within MMJJ_RS05235 at 967.405 kb on - strand, within MMJJ_RS05235 at 967.405 kb on - strand, within MMJJ_RS05235 at 967.406 kb on + strand, within MMJJ_RS05235 at 967.413 kb on - strand, within MMJJ_RS05235 at 967.414 kb on + strand, within MMJJ_RS05235 at 967.436 kb on + strand, within MMJJ_RS05235 at 967.466 kb on - strand, within MMJJ_RS05235 at 967.466 kb on - strand, within MMJJ_RS05235 at 967.467 kb on + strand, within MMJJ_RS05235 at 967.467 kb on + strand, within MMJJ_RS05235 at 967.472 kb on + strand, within MMJJ_RS05235 at 967.492 kb on - strand, within MMJJ_RS05235 at 967.503 kb on - strand at 967.504 kb on + strand, within MMJJ_RS05235 at 967.504 kb on + strand, within MMJJ_RS05235 at 967.512 kb on - strand, within MMJJ_RS05235 at 967.512 kb on - strand, within MMJJ_RS05235 at 967.513 kb on + strand, within MMJJ_RS05235 at 967.513 kb on + strand, within MMJJ_RS05235 at 967.513 kb on + strand, within MMJJ_RS05235 at 967.518 kb on - strand, within MMJJ_RS05235 at 967.519 kb on + strand, within MMJJ_RS05235 at 967.527 kb on - strand, within MMJJ_RS05235 at 967.528 kb on + strand, within MMJJ_RS05235 at 967.535 kb on - strand, within MMJJ_RS05235 at 967.536 kb on + strand, within MMJJ_RS05235 at 967.536 kb on + strand, within MMJJ_RS05235 at 967.548 kb on - strand, within MMJJ_RS05235 at 967.549 kb on + strand, within MMJJ_RS05235 at 967.549 kb on + strand, within MMJJ_RS05235 at 967.569 kb on - strand, within MMJJ_RS05235 at 967.570 kb on + strand, within MMJJ_RS05235 at 967.581 kb on - strand, within MMJJ_RS05235 at 967.582 kb on + strand, within MMJJ_RS05235 at 967.606 kb on + strand, within MMJJ_RS05235 at 967.611 kb on - strand, within MMJJ_RS05235 at 967.639 kb on + strand at 967.639 kb on + strand, within MMJJ_RS05235 at 967.646 kb on + strand, within MMJJ_RS05235 at 967.672 kb on - strand, within MMJJ_RS05235 at 967.672 kb on - strand, within MMJJ_RS05235 at 967.672 kb on - strand, within MMJJ_RS05235 at 967.722 kb on + strand, within MMJJ_RS05235 at 967.798 kb on - strand, within MMJJ_RS05235 at 967.813 kb on - strand, within MMJJ_RS05235 at 967.813 kb on - strand, within MMJJ_RS05235 at 967.813 kb on - strand, within MMJJ_RS05235 at 967.814 kb on + strand, within MMJJ_RS05235 at 967.814 kb on + strand, within MMJJ_RS05235 at 967.828 kb on - strand, within MMJJ_RS05235 at 967.828 kb on - strand, within MMJJ_RS05235 at 967.829 kb on + strand, within MMJJ_RS05235 at 967.834 kb on - strand, within MMJJ_RS05235 at 967.835 kb on + strand, within MMJJ_RS05235 at 967.868 kb on + strand, within MMJJ_RS05235 at 967.903 kb on + strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.969 kb on - strand, within MMJJ_RS05235 at 967.970 kb on + strand, within MMJJ_RS05235 at 967.970 kb on + strand, within MMJJ_RS05235 at 967.970 kb on + strand, within MMJJ_RS05235 at 967.970 kb on + strand, within MMJJ_RS05235 at 967.970 kb on + strand, within MMJJ_RS05235 at 967.970 kb on + strand, within MMJJ_RS05235 at 967.974 kb on - strand, within MMJJ_RS05235 at 967.974 kb on - strand, within MMJJ_RS05235 at 967.974 kb on - strand, within MMJJ_RS05235 at 967.975 kb on + strand, within MMJJ_RS05235 at 967.975 kb on + strand, within MMJJ_RS05235 at 968.033 kb on - strand, within MMJJ_RS05235 at 968.033 kb on - strand, within MMJJ_RS05235 at 968.033 kb on - strand, within MMJJ_RS05235 at 968.033 kb on - strand, within MMJJ_RS05235 at 968.033 kb on - strand, within MMJJ_RS05235 at 968.034 kb on + strand, within MMJJ_RS05235 at 968.034 kb on + strand, within MMJJ_RS05235 at 968.049 kb on - strand, within MMJJ_RS05235
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 965,160 + +1.5 965,245 - -0.1 965,246 + -0.1 965,246 + +1.5 965,256 + +0.3 965,294 - -1.5 965,294 - -0.2 965,295 + +2.7 965,301 - +0.6 965,340 - +1.4 965,341 + -0.3 965,341 + -0.1 965,341 + +0.4 965,341 + -0.6 965,341 + +0.4 965,343 - +0.1 965,343 - +0.6 965,343 - -0.5 965,343 - -0.8 965,344 + -0.2 965,344 + +0.4 965,349 + -1.0 965,354 - -0.7 965,354 - -0.8 965,355 + -0.5 965,361 + -0.1 965,375 - +0.3 965,403 - -0.3 965,416 + +0.2 965,420 + -0.6 965,427 + +0.7 965,502 - +0.1 965,528 - +0.6 965,528 - +0.6 965,529 + -0.4 965,553 - +0.1 965,554 + +2.5 965,554 + -0.8 965,554 + -0.2 965,554 + -0.6 965,557 - +0.6 965,557 - +0.1 965,557 - +0.4 965,557 - +0.3 965,558 + -1.1 965,558 + +0.1 965,558 + +0.4 965,558 + -0.3 965,558 + -1.4 965,585 - +3.5 965,585 - +0.1 965,586 + -0.2 965,614 + -0.0 965,614 + +0.7 965,615 - -0.3 965,616 + +2.5 965,617 - -1.0 965,619 - -0.4 965,620 + +0.6 965,633 - -0.1 965,635 - -0.1 965,636 + +0.1 965,639 - +1.0 965,660 - +0.2 965,660 - +1.6 965,706 - +0.9 965,706 - +0.9 965,824 + +0.7 965,843 + MMJJ_RS05225 0.39 +0.3 965,891 - +2.2 965,895 - MMJJ_RS05225 0.58 +2.5 966,250 + MMJJ_RS05230 0.21 +2.5 967,029 - +2.5 967,030 + +0.2 967,042 - +0.3 967,047 - -0.2 967,047 - +2.0 967,047 - -1.4 967,048 + -0.2 967,049 - -0.1 967,049 - +0.2 967,050 + -0.3 967,050 + -1.5 967,050 + -0.3 967,050 + +0.4 967,050 + -0.9 967,060 - -0.7 967,121 + -0.2 967,125 - +0.7 967,156 + -0.4 967,255 - MMJJ_RS05235 0.12 -0.1 967,266 - MMJJ_RS05235 0.12 -0.2 967,266 - MMJJ_RS05235 0.12 +0.3 967,267 + MMJJ_RS05235 0.12 -0.2 967,274 + MMJJ_RS05235 0.13 -0.6 967,284 - MMJJ_RS05235 0.14 +0.2 967,311 - MMJJ_RS05235 0.15 +0.1 967,311 - MMJJ_RS05235 0.15 +0.2 967,311 - MMJJ_RS05235 0.15 +0.2 967,311 - MMJJ_RS05235 0.15 -0.1 967,312 + +1.5 967,343 - MMJJ_RS05235 0.17 +0.0 967,343 - MMJJ_RS05235 0.17 -0.1 967,344 + MMJJ_RS05235 0.17 +0.5 967,344 + MMJJ_RS05235 0.17 -0.0 967,344 + MMJJ_RS05235 0.17 +1.0 967,344 + MMJJ_RS05235 0.17 +0.0 967,344 + MMJJ_RS05235 0.17 -0.0 967,366 - MMJJ_RS05235 0.18 +0.1 967,366 - MMJJ_RS05235 0.18 +0.2 967,367 + MMJJ_RS05235 0.19 +1.1 967,367 + MMJJ_RS05235 0.19 +0.2 967,372 - MMJJ_RS05235 0.19 +0.1 967,405 - MMJJ_RS05235 0.21 +0.3 967,405 - MMJJ_RS05235 0.21 +0.5 967,405 - MMJJ_RS05235 0.21 +0.1 967,406 + MMJJ_RS05235 0.21 -1.0 967,413 - MMJJ_RS05235 0.21 +0.6 967,414 + MMJJ_RS05235 0.21 +2.2 967,436 + MMJJ_RS05235 0.23 +0.1 967,466 - MMJJ_RS05235 0.25 -0.4 967,466 - MMJJ_RS05235 0.25 -0.3 967,467 + MMJJ_RS05235 0.25 -0.6 967,467 + MMJJ_RS05235 0.25 -0.1 967,472 + MMJJ_RS05235 0.25 -0.2 967,492 - MMJJ_RS05235 0.26 +0.1 967,503 - +0.3 967,504 + MMJJ_RS05235 0.27 +0.2 967,504 + MMJJ_RS05235 0.27 +0.0 967,512 - MMJJ_RS05235 0.27 -1.2 967,512 - MMJJ_RS05235 0.27 -0.6 967,513 + MMJJ_RS05235 0.27 +0.4 967,513 + MMJJ_RS05235 0.27 -0.3 967,513 + MMJJ_RS05235 0.27 +0.1 967,518 - MMJJ_RS05235 0.28 -0.6 967,519 + MMJJ_RS05235 0.28 +0.1 967,527 - MMJJ_RS05235 0.28 -1.1 967,528 + MMJJ_RS05235 0.28 -0.0 967,535 - MMJJ_RS05235 0.29 +0.1 967,536 + MMJJ_RS05235 0.29 -0.4 967,536 + MMJJ_RS05235 0.29 +0.2 967,548 - MMJJ_RS05235 0.30 -0.6 967,549 + MMJJ_RS05235 0.30 -0.2 967,549 + MMJJ_RS05235 0.30 +1.5 967,569 - MMJJ_RS05235 0.31 -0.6 967,570 + MMJJ_RS05235 0.31 +2.1 967,581 - MMJJ_RS05235 0.32 -0.8 967,582 + MMJJ_RS05235 0.32 +2.2 967,606 + MMJJ_RS05235 0.33 +0.1 967,611 - MMJJ_RS05235 0.33 +1.1 967,639 + +0.9 967,639 + MMJJ_RS05235 0.35 -0.2 967,646 + MMJJ_RS05235 0.35 +1.0 967,672 - MMJJ_RS05235 0.37 -0.9 967,672 - MMJJ_RS05235 0.37 +0.1 967,672 - MMJJ_RS05235 0.37 +0.5 967,722 + MMJJ_RS05235 0.40 +0.7 967,798 - MMJJ_RS05235 0.45 +0.8 967,813 - MMJJ_RS05235 0.46 +0.7 967,813 - MMJJ_RS05235 0.46 -0.9 967,813 - MMJJ_RS05235 0.46 -0.1 967,814 + MMJJ_RS05235 0.46 -0.2 967,814 + MMJJ_RS05235 0.46 +0.3 967,828 - MMJJ_RS05235 0.46 -0.3 967,828 - MMJJ_RS05235 0.46 -0.3 967,829 + MMJJ_RS05235 0.47 -0.2 967,834 - MMJJ_RS05235 0.47 -0.4 967,835 + MMJJ_RS05235 0.47 -0.5 967,868 + MMJJ_RS05235 0.49 -0.4 967,903 + MMJJ_RS05235 0.51 +0.3 967,969 - MMJJ_RS05235 0.55 -0.9 967,969 - MMJJ_RS05235 0.55 +0.0 967,969 - MMJJ_RS05235 0.55 -0.7 967,969 - MMJJ_RS05235 0.55 -0.1 967,969 - MMJJ_RS05235 0.55 +0.0 967,969 - MMJJ_RS05235 0.55 -0.1 967,969 - MMJJ_RS05235 0.55 -0.7 967,970 + MMJJ_RS05235 0.55 -0.6 967,970 + MMJJ_RS05235 0.55 +0.7 967,970 + MMJJ_RS05235 0.55 +0.0 967,970 + MMJJ_RS05235 0.55 +0.3 967,970 + MMJJ_RS05235 0.55 +2.5 967,970 + MMJJ_RS05235 0.55 +0.1 967,974 - MMJJ_RS05235 0.55 -0.1 967,974 - MMJJ_RS05235 0.55 +0.0 967,974 - MMJJ_RS05235 0.55 -0.1 967,975 + MMJJ_RS05235 0.55 -0.1 967,975 + MMJJ_RS05235 0.55 +0.4 968,033 - MMJJ_RS05235 0.59 +0.0 968,033 - MMJJ_RS05235 0.59 +1.8 968,033 - MMJJ_RS05235 0.59 +0.0 968,033 - MMJJ_RS05235 0.59 +0.3 968,033 - MMJJ_RS05235 0.59 +0.6 968,034 + MMJJ_RS05235 0.59 +1.9 968,034 + MMJJ_RS05235 0.59 +0.4 968,049 - MMJJ_RS05235 0.60 +0.5
Or see this region's nucleotide sequence