Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04705

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04700 and MMJJ_RS04705 are separated by 56 nucleotidesMMJJ_RS04705 and MMJJ_RS04710 are separated by 17 nucleotides MMJJ_RS04700: MMJJ_RS04700 - deoxyhypusine synthase, at 881,208 to 882,215 _RS04700 MMJJ_RS04705: MMJJ_RS04705 - 3-isopropylmalate dehydratase small subunit, at 882,272 to 882,775 _RS04705 MMJJ_RS04710: MMJJ_RS04710 - threonine synthase, at 882,793 to 884,007 _RS04710 Position (kb) 882 883Strain fitness (log2 ratio) -2 -1 0 1at 881.360 kb on - strand, within MMJJ_RS04700at 881.360 kb on - strand, within MMJJ_RS04700at 881.361 kb on + strand, within MMJJ_RS04700at 881.361 kb on + strand, within MMJJ_RS04700at 881.365 kb on - strand, within MMJJ_RS04700at 881.406 kb on - strand, within MMJJ_RS04700at 881.410 kb on + strandat 881.508 kb on - strand, within MMJJ_RS04700at 881.611 kb on - strand, within MMJJ_RS04700at 881.758 kb on - strand, within MMJJ_RS04700at 881.758 kb on - strand, within MMJJ_RS04700at 881.759 kb on + strand, within MMJJ_RS04700at 881.759 kb on + strand, within MMJJ_RS04700at 881.795 kb on + strand, within MMJJ_RS04700at 881.795 kb on + strand, within MMJJ_RS04700at 881.797 kb on + strand, within MMJJ_RS04700at 881.912 kb on - strand, within MMJJ_RS04700at 881.944 kb on + strand, within MMJJ_RS04700at 881.955 kb on - strand, within MMJJ_RS04700at 881.996 kb on + strand, within MMJJ_RS04700at 882.273 kb on - strandat 882.710 kb on - strand, within MMJJ_RS04705

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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881,360 - MMJJ_RS04700 0.15 +1.7
881,360 - MMJJ_RS04700 0.15 -1.3
881,361 + MMJJ_RS04700 0.15 -0.5
881,361 + MMJJ_RS04700 0.15 -0.1
881,365 - MMJJ_RS04700 0.16 +0.1
881,406 - MMJJ_RS04700 0.20 +1.1
881,410 + +0.9
881,508 - MMJJ_RS04700 0.30 -0.6
881,611 - MMJJ_RS04700 0.40 -0.3
881,758 - MMJJ_RS04700 0.55 -0.1
881,758 - MMJJ_RS04700 0.55 +0.3
881,759 + MMJJ_RS04700 0.55 -0.1
881,759 + MMJJ_RS04700 0.55 -0.4
881,795 + MMJJ_RS04700 0.58 +0.8
881,795 + MMJJ_RS04700 0.58 +0.7
881,797 + MMJJ_RS04700 0.58 -1.1
881,912 - MMJJ_RS04700 0.70 -0.1
881,944 + MMJJ_RS04700 0.73 -1.7
881,955 - MMJJ_RS04700 0.74 -1.9
881,996 + MMJJ_RS04700 0.78 +0.2
882,273 - -1.7
882,710 - MMJJ_RS04705 0.87 -0.1

Or see this region's nucleotide sequence