Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04625 and MMJJ_RS04630 are separated by 381 nucleotides MMJJ_RS04630 and MMJJ_RS04635 are separated by 4 nucleotides MMJJ_RS04635 and MMJJ_RS04640 are separated by 69 nucleotides
MMJJ_RS04625: MMJJ_RS04625 - SLC13 family permease, at 862,149 to 863,489
_RS04625
MMJJ_RS04630: MMJJ_RS04630 - 50S ribosomal protein L40e, at 863,871 to 864,014
_RS04630
MMJJ_RS04635: MMJJ_RS04635 - DUF367 family protein, at 864,019 to 864,534
_RS04635
MMJJ_RS04640: MMJJ_RS04640 - TIGR01177 family methyltransferase, at 864,604 to 865,656
_RS04640
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 862.908 kb on - strand, within MMJJ_RS04625 at 862.909 kb on + strand, within MMJJ_RS04625 at 862.966 kb on - strand, within MMJJ_RS04625 at 862.966 kb on - strand, within MMJJ_RS04625 at 863.016 kb on - strand, within MMJJ_RS04625 at 863.016 kb on - strand, within MMJJ_RS04625 at 863.016 kb on - strand, within MMJJ_RS04625 at 863.017 kb on + strand, within MMJJ_RS04625 at 863.177 kb on - strand, within MMJJ_RS04625 at 863.178 kb on + strand, within MMJJ_RS04625 at 863.182 kb on + strand, within MMJJ_RS04625 at 863.196 kb on - strand, within MMJJ_RS04625 at 863.271 kb on - strand, within MMJJ_RS04625 at 863.271 kb on - strand, within MMJJ_RS04625 at 863.368 kb on + strand at 863.369 kb on - strand at 863.370 kb on + strand at 863.397 kb on - strand at 863.438 kb on - strand at 863.449 kb on + strand at 863.470 kb on + strand at 863.470 kb on + strand at 863.474 kb on - strand at 863.474 kb on - strand at 863.475 kb on + strand at 863.475 kb on + strand at 863.505 kb on + strand at 863.568 kb on - strand at 863.583 kb on - strand at 863.585 kb on - strand at 863.585 kb on - strand at 863.585 kb on - strand at 863.585 kb on - strand at 863.586 kb on + strand at 863.586 kb on + strand at 863.586 kb on + strand at 863.591 kb on - strand at 863.592 kb on + strand at 863.615 kb on + strand at 863.615 kb on + strand at 863.617 kb on - strand at 863.617 kb on - strand at 863.618 kb on + strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.677 kb on - strand at 863.677 kb on - strand at 863.678 kb on + strand at 863.700 kb on - strand at 863.704 kb on - strand at 863.705 kb on + strand at 863.731 kb on + strand at 863.736 kb on - strand at 863.736 kb on - strand at 863.738 kb on - strand at 863.750 kb on - strand at 863.754 kb on - strand at 863.754 kb on - strand at 863.755 kb on + strand at 863.755 kb on + strand at 863.758 kb on + strand at 863.761 kb on + strand at 863.778 kb on - strand at 863.792 kb on + strand at 863.804 kb on - strand at 863.804 kb on - strand at 863.805 kb on + strand at 863.911 kb on - strand, within MMJJ_RS04630 at 864.015 kb on - strand at 864.182 kb on + strand, within MMJJ_RS04635 at 864.182 kb on + strand, within MMJJ_RS04635 at 864.186 kb on + strand, within MMJJ_RS04635 at 864.186 kb on + strand, within MMJJ_RS04635 at 864.199 kb on - strand, within MMJJ_RS04635 at 864.208 kb on - strand, within MMJJ_RS04635 at 864.208 kb on - strand, within MMJJ_RS04635 at 864.209 kb on + strand, within MMJJ_RS04635 at 864.213 kb on - strand, within MMJJ_RS04635 at 864.216 kb on - strand, within MMJJ_RS04635 at 864.444 kb on - strand, within MMJJ_RS04635 at 864.486 kb on - strand at 864.486 kb on - strand at 864.486 kb on - strand at 864.487 kb on + strand at 864.518 kb on - strand at 864.519 kb on + strand at 864.519 kb on + strand at 864.520 kb on - strand at 864.520 kb on - strand at 864.520 kb on - strand at 864.520 kb on - strand at 864.520 kb on - strand at 864.521 kb on + strand at 864.544 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.549 kb on - strand at 864.550 kb on + strand at 864.550 kb on + strand at 864.550 kb on + strand at 864.550 kb on + strand at 864.550 kb on + strand at 864.550 kb on + strand at 864.550 kb on + strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.551 kb on - strand at 864.552 kb on + strand at 864.552 kb on + strand at 864.552 kb on + strand at 864.552 kb on + strand at 864.552 kb on + strand at 864.552 kb on + strand at 864.553 kb on - strand at 864.553 kb on - strand at 864.553 kb on - strand at 864.553 kb on - strand at 864.553 kb on - strand at 864.553 kb on - strand at 864.554 kb on + strand at 864.554 kb on + strand at 864.559 kb on - strand at 864.559 kb on - strand at 864.559 kb on - strand at 864.559 kb on - strand at 864.559 kb on - strand at 864.561 kb on - strand at 864.561 kb on - strand at 864.562 kb on + strand at 864.562 kb on + strand at 864.562 kb on + strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.568 kb on - strand at 864.569 kb on + strand at 864.569 kb on + strand at 864.569 kb on + strand at 864.585 kb on - strand at 864.586 kb on + strand at 864.591 kb on - strand at 864.592 kb on + strand at 864.814 kb on + strand, within MMJJ_RS04640 at 864.834 kb on + strand, within MMJJ_RS04640 at 864.961 kb on + strand, within MMJJ_RS04640 at 864.987 kb on + strand, within MMJJ_RS04640 at 864.998 kb on - strand, within MMJJ_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 862,908 - MMJJ_RS04625 0.57 -1.4 862,909 + MMJJ_RS04625 0.57 -0.5 862,966 - MMJJ_RS04625 0.61 -0.2 862,966 - MMJJ_RS04625 0.61 -0.1 863,016 - MMJJ_RS04625 0.65 -1.1 863,016 - MMJJ_RS04625 0.65 +0.5 863,016 - MMJJ_RS04625 0.65 -0.0 863,017 + MMJJ_RS04625 0.65 +0.1 863,177 - MMJJ_RS04625 0.77 -0.1 863,178 + MMJJ_RS04625 0.77 -0.6 863,182 + MMJJ_RS04625 0.77 +2.5 863,196 - MMJJ_RS04625 0.78 -0.5 863,271 - MMJJ_RS04625 0.84 +0.8 863,271 - MMJJ_RS04625 0.84 +0.5 863,368 + -0.6 863,369 - -0.5 863,370 + -0.1 863,397 - +0.4 863,438 - -0.3 863,449 + -0.1 863,470 + -0.0 863,470 + +0.6 863,474 - +0.6 863,474 - +0.1 863,475 + +0.7 863,475 + -0.2 863,505 + +0.5 863,568 - -0.1 863,583 - +0.3 863,585 - +0.3 863,585 - +0.4 863,585 - +0.0 863,585 - -0.1 863,586 + +0.5 863,586 + +0.6 863,586 + -2.1 863,591 - -0.1 863,592 + +0.1 863,615 + +0.3 863,615 + -0.2 863,617 - +3.1 863,617 - -0.6 863,618 + +0.0 863,669 - -0.3 863,669 - -0.1 863,677 - +0.0 863,677 - +0.0 863,678 + +0.7 863,700 - +0.3 863,704 - +2.2 863,705 + +0.5 863,731 + +0.8 863,736 - +0.4 863,736 - +0.7 863,738 - -0.4 863,750 - -0.2 863,754 - +1.1 863,754 - -0.3 863,755 + +1.2 863,755 + -0.1 863,758 + -0.1 863,761 + +0.7 863,778 - -0.5 863,792 + +1.2 863,804 - -0.6 863,804 - -0.4 863,805 + -0.2 863,911 - MMJJ_RS04630 0.28 +0.5 864,015 - +1.9 864,182 + MMJJ_RS04635 0.32 +0.7 864,182 + MMJJ_RS04635 0.32 +0.3 864,186 + MMJJ_RS04635 0.32 +0.3 864,186 + MMJJ_RS04635 0.32 +0.3 864,199 - MMJJ_RS04635 0.35 -0.2 864,208 - MMJJ_RS04635 0.37 -0.9 864,208 - MMJJ_RS04635 0.37 +0.0 864,209 + MMJJ_RS04635 0.37 -0.1 864,213 - MMJJ_RS04635 0.38 -0.2 864,216 - MMJJ_RS04635 0.38 -0.7 864,444 - MMJJ_RS04635 0.82 +0.5 864,486 - -0.0 864,486 - -0.1 864,486 - -0.4 864,487 + -0.1 864,518 - -0.4 864,519 + +1.4 864,519 + -0.3 864,520 - +0.1 864,520 - -0.3 864,520 - +0.3 864,520 - +0.1 864,520 - +0.3 864,521 + -0.9 864,544 - -0.1 864,549 - +0.3 864,549 - +0.1 864,549 - -0.2 864,549 - -0.1 864,549 - +0.8 864,549 - +2.2 864,549 - +0.5 864,549 - -0.6 864,549 - -1.2 864,549 - -0.9 864,549 - -0.9 864,550 + -0.4 864,550 + +0.9 864,550 + +1.1 864,550 + +0.7 864,550 + +0.6 864,550 + -0.7 864,550 + -0.3 864,551 - -1.0 864,551 - -0.5 864,551 - -0.2 864,551 - +0.2 864,551 - -0.2 864,551 - -0.7 864,551 - +1.5 864,551 - +0.0 864,551 - +0.0 864,551 - +1.2 864,551 - -0.1 864,551 - +0.3 864,551 - -0.1 864,551 - -0.1 864,552 + -0.0 864,552 + +0.1 864,552 + +0.1 864,552 + +0.3 864,552 + +0.5 864,552 + -0.0 864,553 - -0.7 864,553 - -0.2 864,553 - -0.7 864,553 - -0.4 864,553 - -0.8 864,553 - -0.4 864,554 + +0.7 864,554 + -0.5 864,559 - +0.5 864,559 - -0.4 864,559 - +1.5 864,559 - +0.1 864,559 - +0.2 864,561 - -1.1 864,561 - +0.3 864,562 + +1.8 864,562 + +1.4 864,562 + -0.2 864,568 - +0.0 864,568 - +1.2 864,568 - -0.3 864,568 - -0.0 864,568 - +0.6 864,568 - +0.5 864,568 - +0.1 864,568 - +1.9 864,568 - -0.2 864,568 - -0.9 864,568 - -0.9 864,569 + -0.6 864,569 + -0.1 864,569 + +0.6 864,585 - +0.1 864,586 + -0.3 864,591 - +0.0 864,592 + -0.3 864,814 + MMJJ_RS04640 0.20 -0.8 864,834 + MMJJ_RS04640 0.22 -0.2 864,961 + MMJJ_RS04640 0.34 +1.0 864,987 + MMJJ_RS04640 0.36 +0.3 864,998 - MMJJ_RS04640 0.37 +0.6
Or see this region's nucleotide sequence