Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04195 and MMJJ_RS04200 are separated by 11 nucleotides MMJJ_RS04200 and MMJJ_RS04205 are separated by 11 nucleotides MMJJ_RS04205 and MMJJ_RS04210 are separated by 1 nucleotides MMJJ_RS04210 and MMJJ_RS04215 are separated by 94 nucleotides
MMJJ_RS04195: MMJJ_RS04195 - XTP/dITP diphosphatase, at 780,707 to 781,261
_RS04195
MMJJ_RS04200: MMJJ_RS04200 - triphosphoribosyl-dephospho-CoA synthase, at 781,273 to 782,154
_RS04200
MMJJ_RS04205: MMJJ_RS04205 - glycine--tRNA ligase, at 782,166 to 783,890
_RS04205
MMJJ_RS04210: MMJJ_RS04210 - DUF434 domain-containing protein, at 783,892 to 784,560
_RS04210
MMJJ_RS04215: MMJJ_RS04215 - DMT family transporter, at 784,655 to 785,554
_RS04215
Position (kb) 782
783
784 Strain fitness (log2 ratio) -1
0
1
2 at 781.246 kb on + strand at 781.377 kb on + strand, within MMJJ_RS04200 at 781.382 kb on + strand, within MMJJ_RS04200 at 781.422 kb on + strand, within MMJJ_RS04200 at 781.449 kb on - strand, within MMJJ_RS04200 at 781.478 kb on - strand, within MMJJ_RS04200 at 781.479 kb on + strand, within MMJJ_RS04200 at 781.523 kb on - strand, within MMJJ_RS04200 at 781.528 kb on + strand, within MMJJ_RS04200 at 781.649 kb on + strand, within MMJJ_RS04200 at 781.713 kb on - strand, within MMJJ_RS04200 at 781.714 kb on + strand, within MMJJ_RS04200 at 781.891 kb on + strand, within MMJJ_RS04200 at 781.910 kb on - strand, within MMJJ_RS04200 at 781.910 kb on - strand, within MMJJ_RS04200 at 781.934 kb on - strand, within MMJJ_RS04200 at 781.953 kb on - strand, within MMJJ_RS04200 at 781.986 kb on - strand, within MMJJ_RS04200 at 782.319 kb on - strand at 782.998 kb on + strand at 783.876 kb on + strand at 783.943 kb on - strand at 783.943 kb on - strand at 783.944 kb on + strand at 783.976 kb on + strand, within MMJJ_RS04210 at 784.041 kb on - strand, within MMJJ_RS04210 at 784.072 kb on + strand, within MMJJ_RS04210 at 784.072 kb on + strand, within MMJJ_RS04210 at 784.137 kb on - strand, within MMJJ_RS04210 at 784.158 kb on + strand, within MMJJ_RS04210 at 784.159 kb on - strand, within MMJJ_RS04210 at 784.160 kb on + strand, within MMJJ_RS04210 at 784.258 kb on - strand, within MMJJ_RS04210 at 784.270 kb on - strand, within MMJJ_RS04210 at 784.270 kb on - strand, within MMJJ_RS04210 at 784.270 kb on - strand, within MMJJ_RS04210 at 784.324 kb on - strand, within MMJJ_RS04210 at 784.375 kb on - strand, within MMJJ_RS04210 at 784.455 kb on - strand, within MMJJ_RS04210 at 784.459 kb on - strand, within MMJJ_RS04210 at 784.477 kb on + strand, within MMJJ_RS04210 at 784.523 kb on - strand at 784.572 kb on - strand at 784.580 kb on + strand at 784.591 kb on - strand at 784.654 kb on + strand at 784.656 kb on - strand at 784.682 kb on + strand at 784.684 kb on + strand at 784.686 kb on + strand at 784.703 kb on - strand at 784.762 kb on - strand, within MMJJ_RS04215 at 784.772 kb on - strand, within MMJJ_RS04215 at 784.804 kb on - strand, within MMJJ_RS04215 at 784.841 kb on - strand, within MMJJ_RS04215 at 784.875 kb on - strand, within MMJJ_RS04215 at 784.875 kb on - strand, within MMJJ_RS04215 at 784.878 kb on + strand, within MMJJ_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 781,246 + -0.4 781,377 + MMJJ_RS04200 0.12 +0.9 781,382 + MMJJ_RS04200 0.12 -0.3 781,422 + MMJJ_RS04200 0.17 +0.9 781,449 - MMJJ_RS04200 0.20 +0.9 781,478 - MMJJ_RS04200 0.23 +0.6 781,479 + MMJJ_RS04200 0.23 +0.3 781,523 - MMJJ_RS04200 0.28 +0.5 781,528 + MMJJ_RS04200 0.29 -0.1 781,649 + MMJJ_RS04200 0.43 +0.5 781,713 - MMJJ_RS04200 0.50 +0.2 781,714 + MMJJ_RS04200 0.50 +0.6 781,891 + MMJJ_RS04200 0.70 +1.3 781,910 - MMJJ_RS04200 0.72 -0.1 781,910 - MMJJ_RS04200 0.72 +0.0 781,934 - MMJJ_RS04200 0.75 +0.5 781,953 - MMJJ_RS04200 0.77 +2.7 781,986 - MMJJ_RS04200 0.81 -0.1 782,319 - +1.8 782,998 + -0.1 783,876 + +0.1 783,943 - +1.4 783,943 - -0.0 783,944 + +0.2 783,976 + MMJJ_RS04210 0.13 -0.6 784,041 - MMJJ_RS04210 0.22 +0.4 784,072 + MMJJ_RS04210 0.27 +0.1 784,072 + MMJJ_RS04210 0.27 -0.5 784,137 - MMJJ_RS04210 0.37 -0.2 784,158 + MMJJ_RS04210 0.40 -0.3 784,159 - MMJJ_RS04210 0.40 +1.8 784,160 + MMJJ_RS04210 0.40 -1.0 784,258 - MMJJ_RS04210 0.55 -0.2 784,270 - MMJJ_RS04210 0.57 -0.0 784,270 - MMJJ_RS04210 0.57 +0.8 784,270 - MMJJ_RS04210 0.57 -0.1 784,324 - MMJJ_RS04210 0.65 -0.0 784,375 - MMJJ_RS04210 0.72 -0.1 784,455 - MMJJ_RS04210 0.84 -0.2 784,459 - MMJJ_RS04210 0.85 -0.3 784,477 + MMJJ_RS04210 0.87 +0.3 784,523 - -0.9 784,572 - +1.0 784,580 + -0.3 784,591 - -0.4 784,654 + +1.7 784,656 - -0.2 784,682 + -0.5 784,684 + +0.6 784,686 + -0.1 784,703 - -0.2 784,762 - MMJJ_RS04215 0.12 -0.3 784,772 - MMJJ_RS04215 0.13 -0.6 784,804 - MMJJ_RS04215 0.17 +1.2 784,841 - MMJJ_RS04215 0.21 -0.3 784,875 - MMJJ_RS04215 0.24 -0.3 784,875 - MMJJ_RS04215 0.24 +0.1 784,878 + MMJJ_RS04215 0.25 +0.9
Or see this region's nucleotide sequence