Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03100

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03095 and MMJJ_RS03100 are separated by 172 nucleotidesMMJJ_RS03100 and MMJJ_RS03105 are separated by 73 nucleotides MMJJ_RS03095: MMJJ_RS03095 - bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase, at 581,241 to 582,884 _RS03095 MMJJ_RS03100: MMJJ_RS03100 - threonine--tRNA ligase, at 583,057 to 584,925 _RS03100 MMJJ_RS03105: MMJJ_RS03105 - methyl-accepting chemotaxis protein, at 584,999 to 587,194 _RS03105 Position (kb) 583 584 585Strain fitness (log2 ratio) -2 -1 0 1 2 3at 582.140 kb on - strand, within MMJJ_RS03095at 582.143 kb on - strand, within MMJJ_RS03095at 582.335 kb on + strand, within MMJJ_RS03095at 582.484 kb on + strand, within MMJJ_RS03095at 582.487 kb on - strand, within MMJJ_RS03095at 582.946 kb on + strandat 582.964 kb on - strandat 583.003 kb on + strandat 583.018 kb on - strandat 583.041 kb on - strandat 583.520 kb on - strand, within MMJJ_RS03100at 583.994 kb on + strand, within MMJJ_RS03100at 584.733 kb on + strand, within MMJJ_RS03100at 584.765 kb on - strandat 584.924 kb on + strandat 584.924 kb on + strandat 584.973 kb on - strandat 584.974 kb on + strandat 584.977 kb on + strandat 584.989 kb on - strandat 584.989 kb on - strandat 584.990 kb on + strandat 584.993 kb on - strandat 584.994 kb on + strandat 584.996 kb on - strandat 584.996 kb on - strandat 584.996 kb on - strandat 584.997 kb on + strandat 585.001 kb on + strandat 585.004 kb on - strandat 585.005 kb on + strandat 585.005 kb on + strandat 585.033 kb on + strandat 585.047 kb on + strandat 585.161 kb on + strandat 585.175 kb on - strandat 585.191 kb on + strandat 585.272 kb on + strandat 585.385 kb on - strand, within MMJJ_RS03105at 585.386 kb on + strand, within MMJJ_RS03105at 585.386 kb on + strand, within MMJJ_RS03105at 585.392 kb on + strand, within MMJJ_RS03105at 585.410 kb on + strand, within MMJJ_RS03105at 585.423 kb on + strand, within MMJJ_RS03105at 585.431 kb on + strand, within MMJJ_RS03105at 585.500 kb on - strand, within MMJJ_RS03105at 585.536 kb on + strand, within MMJJ_RS03105at 585.548 kb on + strand, within MMJJ_RS03105at 585.611 kb on - strand, within MMJJ_RS03105at 585.611 kb on - strand, within MMJJ_RS03105at 585.611 kb on - strand, within MMJJ_RS03105at 585.611 kb on - strand, within MMJJ_RS03105at 585.611 kb on - strand, within MMJJ_RS03105at 585.620 kb on + strand, within MMJJ_RS03105at 585.638 kb on - strand, within MMJJ_RS03105at 585.676 kb on - strand, within MMJJ_RS03105at 585.721 kb on - strand, within MMJJ_RS03105at 585.721 kb on - strand, within MMJJ_RS03105at 585.721 kb on - strand, within MMJJ_RS03105at 585.721 kb on - strand, within MMJJ_RS03105at 585.722 kb on + strand, within MMJJ_RS03105at 585.722 kb on + strand, within MMJJ_RS03105at 585.723 kb on - strand, within MMJJ_RS03105at 585.723 kb on - strand, within MMJJ_RS03105at 585.723 kb on - strand, within MMJJ_RS03105at 585.723 kb on - strand, within MMJJ_RS03105at 585.724 kb on + strand, within MMJJ_RS03105at 585.725 kb on - strand, within MMJJ_RS03105at 585.725 kb on - strand, within MMJJ_RS03105at 585.726 kb on + strand, within MMJJ_RS03105at 585.726 kb on + strand, within MMJJ_RS03105at 585.731 kb on + strand, within MMJJ_RS03105at 585.776 kb on + strand, within MMJJ_RS03105at 585.776 kb on - strand, within MMJJ_RS03105at 585.777 kb on + strand, within MMJJ_RS03105at 585.893 kb on - strand, within MMJJ_RS03105at 585.893 kb on - strand, within MMJJ_RS03105at 585.893 kb on - strand, within MMJJ_RS03105at 585.894 kb on + strand, within MMJJ_RS03105at 585.894 kb on + strand, within MMJJ_RS03105

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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582,140 - MMJJ_RS03095 0.55 -0.8
582,143 - MMJJ_RS03095 0.55 +0.2
582,335 + MMJJ_RS03095 0.67 +1.6
582,484 + MMJJ_RS03095 0.76 -0.2
582,487 - MMJJ_RS03095 0.76 +1.4
582,946 + -0.8
582,964 - -0.3
583,003 + +2.6
583,018 - +0.8
583,041 - +0.6
583,520 - MMJJ_RS03100 0.25 -2.2
583,994 + MMJJ_RS03100 0.50 +2.2
584,733 + MMJJ_RS03100 0.90 +1.4
584,765 - +0.2
584,924 + -1.1
584,924 + +1.4
584,973 - -0.2
584,974 + -0.2
584,977 + -0.6
584,989 - +1.3
584,989 - +2.4
584,990 + +0.9
584,993 - -0.8
584,994 + +2.4
584,996 - -0.2
584,996 - +0.6
584,996 - -0.4
584,997 + -0.3
585,001 + -0.3
585,004 - +0.8
585,005 + -0.2
585,005 + -0.1
585,033 + +0.4
585,047 + -0.3
585,161 + -0.3
585,175 - +0.7
585,191 + +0.1
585,272 + +1.7
585,385 - MMJJ_RS03105 0.18 -0.9
585,386 + MMJJ_RS03105 0.18 +0.3
585,386 + MMJJ_RS03105 0.18 -0.2
585,392 + MMJJ_RS03105 0.18 -0.1
585,410 + MMJJ_RS03105 0.19 +1.4
585,423 + MMJJ_RS03105 0.19 -0.3
585,431 + MMJJ_RS03105 0.20 +0.0
585,500 - MMJJ_RS03105 0.23 -0.5
585,536 + MMJJ_RS03105 0.24 +0.4
585,548 + MMJJ_RS03105 0.25 +1.6
585,611 - MMJJ_RS03105 0.28 +0.2
585,611 - MMJJ_RS03105 0.28 +0.1
585,611 - MMJJ_RS03105 0.28 +0.5
585,611 - MMJJ_RS03105 0.28 -0.4
585,611 - MMJJ_RS03105 0.28 +0.4
585,620 + MMJJ_RS03105 0.28 +1.6
585,638 - MMJJ_RS03105 0.29 -0.0
585,676 - MMJJ_RS03105 0.31 +0.3
585,721 - MMJJ_RS03105 0.33 +0.2
585,721 - MMJJ_RS03105 0.33 -0.2
585,721 - MMJJ_RS03105 0.33 -0.2
585,721 - MMJJ_RS03105 0.33 +0.4
585,722 + MMJJ_RS03105 0.33 -1.5
585,722 + MMJJ_RS03105 0.33 +0.2
585,723 - MMJJ_RS03105 0.33 -1.1
585,723 - MMJJ_RS03105 0.33 +0.2
585,723 - MMJJ_RS03105 0.33 +1.1
585,723 - MMJJ_RS03105 0.33 +0.7
585,724 + MMJJ_RS03105 0.33 -0.5
585,725 - MMJJ_RS03105 0.33 -0.1
585,725 - MMJJ_RS03105 0.33 +0.3
585,726 + MMJJ_RS03105 0.33 -0.8
585,726 + MMJJ_RS03105 0.33 +0.2
585,731 + MMJJ_RS03105 0.33 +1.0
585,776 + MMJJ_RS03105 0.35 +0.3
585,776 - MMJJ_RS03105 0.35 +0.0
585,777 + MMJJ_RS03105 0.35 +0.0
585,893 - MMJJ_RS03105 0.41 +0.2
585,893 - MMJJ_RS03105 0.41 +0.3
585,893 - MMJJ_RS03105 0.41 +3.1
585,894 + MMJJ_RS03105 0.41 -0.3
585,894 + MMJJ_RS03105 0.41 -0.6

Or see this region's nucleotide sequence